Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0655
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 194 4e-50
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 5e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.003
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 31 1.1
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.6
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.4
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 29 3.4
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 5.9
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 7.8
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 7.8
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 7.8
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 7.8
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 7.8
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 7.8
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 194 bits (474), Expect = 4e-50
Identities = 86/117 (73%), Positives = 102/117 (87%)
Frame = +1
Query: 1 AGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 180
AGD KNNPPK FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK
Sbjct: 185 AGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGK 244
Query: 181 STEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 351
E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 245 KLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 160 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 309
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 223 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 339
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 124 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 252
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 212 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 105
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 145 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 285
EI R TG++TE+N ++ SG+ I +V + C+ Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 588 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 448
+QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 350 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 252
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 118 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 297
T H+A + E ++ + T K V+ S + + +L S +EFP LG+
Sbjct: 103 TVHLAALYIEHMTEIIQNTEKPPSVSDASSPGTTSDLDDLETDFTFSDFSLEEFPELGKL 162
Query: 298 AVR 306
A+R
Sbjct: 163 ALR 165
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 335 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 240
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 252
+N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 318
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,634,354
Number of Sequences: 59808
Number of extensions: 395229
Number of successful extensions: 1132
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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