Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0655
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   233   1e-63
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   229   2e-62
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   162   2e-42
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.0  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  233 bits (569), Expect = 1e-63
 Identities = 108/118 (91%), Positives = 112/118 (94%)
 Frame = +1

Query: 1   AGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 180
           AGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+IKEK DRR GK
Sbjct: 326 AGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGK 385

Query: 181 STEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 354
           +TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 386 TTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  229 bits (560), Expect = 2e-62
 Identities = 106/118 (89%), Positives = 112/118 (94%)
 Frame = +1

Query: 1   AGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 180
           AGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK
Sbjct: 326 AGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGK 385

Query: 181 STEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 354
           +TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 386 TTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  162 bits (394), Expect = 2e-42
 Identities = 75/83 (90%), Positives = 78/83 (93%)
 Frame = +1

Query: 1   AGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 180
           AGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK
Sbjct: 37  AGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGK 96

Query: 181 STEVNPKSIKSGDAAIVNLVPSK 249
           +TE NPKSIKSGDAAIV L P+K
Sbjct: 97  TTEENPKSIKSGDAAIVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 461 KYRSCMKNCAVNSSSYFLPLVAFS 390
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 461 KYRSCMKNCAVNSSSYFLPLVAFS 390
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 461 KYRSCMKNCAVNSSSYFLPLVAFS 390
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 500 CSPFFLRNTFR*MKYRSCMKN 438
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 90  RLHTSLGLPHCPHC 131
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,658
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)