Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0652
         (358 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.8  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   5.0  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   6.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   6.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   6.6  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    20   8.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 52  ACSIKNCDPC 23
           AC ++N DPC
Sbjct: 426 ACGLRNGDPC 435


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 52  ACSIKNCDPC 23
           AC ++N DPC
Sbjct: 426 ACGLRNGDPC 435


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 52  ACSIKNCDPC 23
           AC ++N DPC
Sbjct: 426 ACGLRNGDPC 435


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 52  ACSIKNCDPC 23
           AC ++N DPC
Sbjct: 426 ACGLRNGDPC 435


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 240 DSGSQMRGPPPPVRATETI 296
           D GS   GP PP   TE +
Sbjct: 270 DLGSPSSGPAPPGDFTENM 288


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 340 CCISRIISWWDRSEVMVSVARTGG 269
           C I+ I+ +W R  + +  A  GG
Sbjct: 317 CDIATILDFWVRCVLSLHCAAVGG 340


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 200  GGERYRETSVHCK 162
            GG+  R T +HC+
Sbjct: 1183 GGDGVRTTPIHCQ 1195


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 82  ESSDAISKCWAC 47
           ES DAI++ +AC
Sbjct: 527 ESQDAITRIYAC 538


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 82  ESSDAISKCWAC 47
           ES DAI++ +AC
Sbjct: 527 ESQDAITRIYAC 538


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 214 PPNHQDAPGTAGP 252
           PP H   P  AGP
Sbjct: 316 PPLHISGPAEAGP 328


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,322
Number of Sequences: 336
Number of extensions: 2260
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)