Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0652
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.053
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 28 0.37
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 0.49
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 0.65
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 1.1
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 2.0
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.0
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 26 2.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 2.6
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 2.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 2.6
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 2.6
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 3.5
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 3.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 4.6
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 4.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 6.1
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 24 6.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 6.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 24 6.1
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 24 6.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 8.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 8.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.053
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 171 NARLAIPLTAM--SAGPPEPPRCARDSGSQMRGPPPPVRATETITS 302
NA +IPL SA PP PPR A +G Q PPP+ ++ +++
Sbjct: 346 NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ----PPPLSSSRAVSN 387
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 0.37
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 33 QFLMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLL-QRRDHLLAVNARLAIPLTAMSA 209
+ L A+ +DI +H+L +EN+R SL+ RD++ ++ + +
Sbjct: 1087 EILGSPAKDYDIHDQSYSVHELHSENMRENVGQSSLIYNNRDYMNTPMNDFSLSFSEIKG 1146
Query: 210 GPPEPPRCARDSGSQMRGPPPPVRATETITSD 305
G E P S M G P+ A E++ D
Sbjct: 1147 GILESP-----VESPMTGTISPIDADESVLHD 1173
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 0.49
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 22 SRDRSF*WSKPSTSI*HHYSHACTSSARRT 111
SR R+ +PS+SI H ++H+ TSS+ T
Sbjct: 418 SRSRATIHERPSSSILHRHAHSLTSSSFST 447
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 0.65
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 27 GSQFLMEQAQHFDIASLLSC-LHQLRTENVRLEEHVGSLLQRRDHLLAVNARLAIPL 194
G + E +H D L + + Q+ +N + E + + +R DHL R AIPL
Sbjct: 640 GLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRIDHLERAYRREAIPL 696
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 355 FQLGFCCISRIISWWDRSEV 296
F L +CC+S I++ DRS +
Sbjct: 31 FILSYCCVSYFINYLDRSSI 50
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 187 IARRAFTASRWSRRCSRLPTCSSRRTFSVR 98
+A F S W + SRLP + R + VR
Sbjct: 791 LAMWKFATSNWDKLLSRLPVAGTMRGYVVR 820
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATE 290
P + ++ P P R + GSQ+ PPPP ++
Sbjct: 248 PQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQ 281
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 341 LLHITHHKLVGPVRGDGLGGAYRR 270
LL + K VGPV DGL A RR
Sbjct: 141 LLRLLKQKNVGPVNVDGLTSASRR 164
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 2.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 30 SQFLMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLLQRRDHLLAVNARLA 185
S +EQ + D+ + +L+ E RLE S + + ++ N+RLA
Sbjct: 90 SNMQLEQQLYSDLDHINVLQQELKVETARLENEQKSYEEMKQNMAINNSRLA 141
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 195 TAMSAGPPEPPRCARDSGSQMRGPPPPVRATET 293
+++S PP PP + + + PPP + ET
Sbjct: 902 SSVSTLPPPPPTASMTASAPAIASPPPPKVGET 934
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 79 SHACTSSARRTCVWRSMWVVCYSVVTICL 165
S+A SA RTC W V + +CL
Sbjct: 1267 SYAFHKSASRTCQTFGFWCVTVLTIALCL 1295
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P + GPP PP +G+ PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 170 ERSSRDTSHRHVCGSPRTTKMRPGQRV 250
+ ++RDTS + PRT +RPG R+
Sbjct: 273 DSNNRDTSLKSHFVEPRTQALRPGARL 299
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.0 bits (52), Expect = 3.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 186 SRDERSLQADGHDAVADYPHAPPDARSPCGAGAGMRVVMLYRSAGLAPLKTAIPAPTDAR 7
S+D R + + D VAD P A +P + +V +A AP T PAP
Sbjct: 83 SKDAREIYYNFEDEVADEP-----AEAPASTSSTPKV---ETAAAAAPAATPAPAPAQTS 134
Query: 6 A 4
A
Sbjct: 135 A 135
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 3.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 254 LGPAVPGASWWFGGTRRHGGERYRE 180
+G +P S F GT++H G +R+
Sbjct: 651 MGVNMPAKSVVFSGTQKHDGRNFRD 675
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 170 ERSSRDTSHRHVCGSPRTTKMR 235
++S + T+ R+V G+P+TT R
Sbjct: 81 QKSGKGTAARYVSGAPKTTGAR 102
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 261 GPPPPVRATETITSD 305
GPPPP R E + SD
Sbjct: 289 GPPPPERGWEKLVSD 303
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.2 bits (50), Expect = 6.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 196 PPCLRVPPNHQDAPGTAGPRCAARHRLYAPPRPS 297
PP + VPP P AGP A L A PS
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -1
Query: 142 SRLPTCSSRRTFSVRSWCRHESSDAISKCWACSIKNCDPCSH 17
S LPT SS + +C S ++ CW + CD H
Sbjct: 227 SALPTGSSITNLAYCGYC---SKPSMGACWVYGCQLCDTFYH 265
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 216 PEPPRCARDSGSQMRGPPPPVRAT 287
P PP A + PPPPVR++
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSS 752
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.2 bits (50), Expect = 6.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 264 GRASGTRCPGRILVVRGDPQ 205
GR S ++ P +VV+GDP+
Sbjct: 896 GRLSRSKIPSLAVVVKGDPE 915
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 24.2 bits (50), Expect = 6.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -1
Query: 304 SEVMVSVARTGGGGPRIWDPLSRAHLGGSG 215
+E+++ ++ G +W+ + A LGG G
Sbjct: 60 NEMILKLSSVQGEDASVWEQIPAAELGGEG 89
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPP 275
PP PP + SQ PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.8 bits (49), Expect = 8.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 183 AIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITS 302
+IP T S P P S S PPPP + T TS
Sbjct: 290 SIPPTGNST-TPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328
Score = 23.8 bits (49), Expect = 8.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 183 AIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITS 302
+IP T S P P S S PPPP + T TS
Sbjct: 344 SIPPTGNST-TPVTPTVPPTSTSSTSTPPPPASTSSTGTS 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,005
Number of Sequences: 5004
Number of extensions: 33276
Number of successful extensions: 124
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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