Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0652
(358 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24313| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-06
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 32 0.16
SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.48
SB_59764| Best HMM Match : Vicilin_N (HMM E-Value=0.5) 29 0.84
SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056) 29 1.5
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 1.5
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063) 29 1.5
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 2.6
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 2.6
SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05) 28 2.6
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22) 27 3.4
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 27 4.5
SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 5.0
SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07) 27 5.9
SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09) 27 5.9
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08) 27 5.9
SB_34763| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10) 27 5.9
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26) 27 5.9
SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.8
SB_48239| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.8
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
>SB_24313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 46.8 bits (106), Expect = 5e-06
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 78 LSCLHQLRTENVRLEEHVGSLLQRRDHLLAVNARLAIPLTAMSAGPPEPPR--CARDSGS 251
+S LHQL+ +N RLE + +L+ RR LL VNARL+ P++ P RD+ S
Sbjct: 1 MSSLHQLKADNSRLEARLDALIARRSQLLQVNARLSAPMSCTPTNSSSTPTDVTMRDASS 60
Query: 252 Q 254
+
Sbjct: 61 K 61
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 31.9 bits (69), Expect = 0.16
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 168 VNARLAIPLTAMSAGP-PEPPRCARDSGSQMRGPPPPVRATET 293
V A P+ A S P P PP A ++ SQ PPPP + T
Sbjct: 93 VEAPTPTPMVAQSVAPTPPPPPRAPETPSQAPSPPPPPTSPAT 135
Score = 30.3 bits (65), Expect = 0.48
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETI 296
P+ + GPP PP A +G PPPP+ T+
Sbjct: 143 PIAPATGGPPPPPPIAPATGGP--PPPPPIAPAATV 176
>SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 30.3 bits (65), Expect = 0.48
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 181 SRYLSPPCLRVPPNHQDAPGTAGPRCAARHRL---YAPPRPSPLTGPTSL*CVICNKSP 348
S +L+P + + P H AP P+C + H PP PS PTS C N +P
Sbjct: 40 STHLTP--VHLDPPHPTAPRPTSPQCTSTHLTPVHLDPPHPS-APRPTSPQCTSTNLTP 95
>SB_59764| Best HMM Match : Vicilin_N (HMM E-Value=0.5)
Length = 302
Score = 29.5 bits (63), Expect = 0.84
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +3
Query: 207 AGPPEPPRCAR--DS----GSQMRGPPPPVRATETIT 299
AGPP+PPR A+ DS ++ R P PPV+ + T
Sbjct: 94 AGPPKPPRLAKVPDSPASPSTKRRAPAPPVKLDDKST 130
>SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)
Length = 265
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -1
Query: 349 LGFCCIS----RIISWWDRSEVMVSVARTGGGGPRIWDPLSRAHLGG-SGGPADMAVRGI 185
L + C+ R+ + W+ + G ++ D + +L G SG A +
Sbjct: 145 LNYTCVGFSPDRLTAKWELDGTDSGITTYGNARYQVVDGKTALYLDGTSGSYATIPDVDF 204
Query: 184 ARRAFTASRWSRRCSRLPTCS 122
+ FT S W R + +PTC+
Sbjct: 205 RKTRFTISLWMRPMTPMPTCA 225
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 165 AVNARLAIPLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
+V A A P A +A P P + +G Q RGP PP
Sbjct: 705 SVAAPKAYPPPAAAAAPQGYPPSSAPTGYQARGPAPP 741
>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
Length = 773
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 207 AGPPEPPRCARD 242
AGPP+ PRCARD
Sbjct: 88 AGPPDSPRCARD 99
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRS 311
P + +GP +PP +++ G+ + R +T+T+DRS
Sbjct: 12 PPPSAPSGPVKPPPSSKNRGALLSDIHKGARLKKTVTNDRS 52
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 210 GPPEPPRCARDSGSQMRGPPPPVRATE 290
GPP PP R ++ PPPP A +
Sbjct: 370 GPPPPPPGRRPPSGKINPPPPPPPAMD 396
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 210 GPPEPPRCARDSGSQMRGPPPPVRAT 287
GPP PP +RD Q PPPP+ AT
Sbjct: 297 GPPLPP--SRD---QAPAPPPPLNAT 317
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETI 296
PL A PP PP + ++ PPPP RA + +
Sbjct: 334 PLRGQIA-PPPPPISKPPTSTRSAPPPPPGRAPQPL 368
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P + SA PP P R + G GPPPP
Sbjct: 350 PTSTRSAPPPPPGRAPQPLG----GPPPP 374
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 210 GPPEPPRCARDSGSQMRGPPPPVRATE 290
GPP PP R ++ PPPP A +
Sbjct: 282 GPPPPPPGRRPPSGKINPPPPPPPAMD 308
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 210 GPPEPPRCARDSGSQMRGPPPPVRAT 287
GPP PP +RD Q PPPP+ AT
Sbjct: 209 GPPLPP--SRD---QAPAPPPPLNAT 229
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETI 296
PL A PP PP + ++ PPPP RA + +
Sbjct: 246 PLRGQIA-PPPPPISKPPTSTRSAPPPPPGRAPQPL 280
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P + SA PP P R + G GPPPP
Sbjct: 262 PTSTRSAPPPPPGRAPQPLG----GPPPP 286
>SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 27.9 bits (59), Expect = 2.6
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = -1
Query: 334 ISRIISWWDRSEVMVSVARTGGGGPRIWDPLSRAHLGGSGGPADMAVRGIARR--AFTAS 161
+S I + R E+ + RT R DPL+ P + + I R AF AS
Sbjct: 242 VSLIGLYTRRRELAAAFTRTPAVNQRATDPLATEGTDDVTPPLRVYAQQIKDRPLAFPAS 301
Query: 160 RWSRRCSRLPTCSSRRTFSVRSWCRHESSDAISKC 56
R + SRL RR +S + C + + C
Sbjct: 302 RPGQCKSRLLAMEYRRRYSADTSCLCTADQGSTTC 336
>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
Length = 991
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 285 WRVQAVAGRASGTRCPGRILVVRGDPQTW 199
WR+++ G AS + PG LV+ P W
Sbjct: 527 WRIKSFFGNASNSCSPGDPLVLERPPPRW 555
>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
Length = 1197
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQM---RGP-----PPP 275
PL S PP PPR A D +M RGP PPP
Sbjct: 878 PLPPKSDTPPPPPRPAADESQEMSRTRGPKDGRKPPP 914
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +3
Query: 78 LSCLHQLRTENVRLEEHVGSLLQRRDHLLAVNARLAIPLT--AMSAGPPEPPRCARDSGS 251
L+ L++ R + + SL LA +++ PL +S P PP S
Sbjct: 954 LTPLYEERCQETPTDSSTASLAHTSPAHLATASQITHPLPHRTISIPYPSPPHTTSSQSS 1013
Query: 252 QMRGPPPP 275
Q PPP
Sbjct: 1014 QATHTPPP 1021
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 76 YSHACTSSARRTCVWRSMWVVCYSVVTICLQ*TL----VSRYLSPPCL 207
Y H+ S R CV M+ VC S+ C++ + SRY+ C+
Sbjct: 256 YVHSVCVSLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCV 303
>SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 132 PHAPPDARSPCGAGAGMRVVMLYRSAGLA-PLKTAIPAP 19
P APP ++PCGAG M+ + LA P+ A P P
Sbjct: 73 PLAPPVQQAPCGAGT-MQAPCAGQQMPLAPPMPLAPPVP 110
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 132 PHAPPDARSPCGAGAGMRVVMLYRSAGLA-PLKTAIPAP 19
P APP ++PCGAG M+ + LA P+ A P P
Sbjct: 116 PLAPPVQQAPCGAGP-MQAPCAGQQMPLAPPMPLAPPVP 153
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETI 296
P + PP P+ AR SGS G P P + T T+
Sbjct: 259 PAQVKPSPPPTKPKPAR-SGSVDHGTPSPGKVTSTV 293
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 170 ERSSRDTSHRHVCGSPRTTKMRPGQR 247
E S+ +HRH CG PR R +R
Sbjct: 343 ENSAASCAHRHACGVPRMRGQRLRRR 368
>SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 23.4 bits (48), Expect(2) = 5.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 183 AIPLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
+IP T PP PP AR + PPPP
Sbjct: 779 SIPTTPPPEYPPPPPGLARPN------PPPP 803
Score = 21.8 bits (44), Expect(2) = 5.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 264 PPPPVRATETITSDRSHQL 320
P PP+ +TIT H L
Sbjct: 840 PAPPITPDDTITRSAVHNL 858
>SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 126 HVGSLLQRRDHLLAVNARLAIPLTAMSAGPPEPPRCARDSGSQMRGP 266
++G + ++ DHL V P M + P P +RD S P
Sbjct: 110 NLGDVFEKEDHLDEVQTPRPPPHVLMGSSTPGLPSTSRDGPSNSANP 156
>SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 151 RRCSRLPTCSSRRTFSVRSWCRHESSDAIS 62
RRC L +S +T + + RHES D ++
Sbjct: 127 RRCQSLNYVTSSKTCEINNSTRHESEDDVT 156
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 198 AMSAGPPEPPRCARDSGSQMRGPPPP 275
A GPPE + SGSQ P PP
Sbjct: 1519 APGVGPPEDGGMGQRSGSQQISPSPP 1544
>SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)
Length = 564
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 151 RRCSRLPTCSSRRTFSVRSWCRHESSDAIS 62
RRC L +S +T + + RHES D ++
Sbjct: 517 RRCQSLNYITSSKTCEINNATRHESEDDVT 546
>SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 165 AVNARLAIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQLMMRDMQQK 344
A NA IPLT+++ P P A+ + +++R + TI++ L+ +++
Sbjct: 109 AKNAPTPIPLTSVAPESPHPQASAKATEAKLRVAQLHSKRKATISTPIKIDLLEQELSSH 168
Query: 345 P 347
P
Sbjct: 169 P 169
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = -2
Query: 186 SRDERSLQADGHDAVADYPHAPPDARSPCGAGAGMRVVMLYRSAGLAPLKTAIPAP 19
S +ER D H+ +A+ H P D +R YR + + P+P
Sbjct: 1179 SSEERDEDKDYHEPIAESNHQPSDLIYLDSTSDFLRPAQPYRPVAVRSFSSRYPSP 1234
>SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09)
Length = 97
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 151 RRCSRLPTCSSRRTFSVRSWCRHESSDAIS 62
RRC L +S +T + + RHES D ++
Sbjct: 50 RRCQSLNYVTSSKTCEINNSTRHESEDDVT 79
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 192 EVSRDERSLQADGHDAVADYPHAPPDARSP 103
+V +D L + D +A P APP +SP
Sbjct: 1153 DVDKDVLDLSPEVEDDIASLPPAPPPPKSP 1182
>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 614
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 151 RRCSRLPTCSSRRTFSVRSWCRHESSDAIS 62
RRC L +S +T + + RHES D ++
Sbjct: 567 RRCQSLNYVTSSKTCEINNSTRHESEDDVT 596
>SB_34763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 120 PDARSPCGAGAGMRVVMLYRSAGLAP 43
P R+P GA R +MLYRSA L P
Sbjct: 5 PKRRTPEGA-TNERRIMLYRSAALTP 29
>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 180 LAIPLTAMSAGPPEPPRCARDSGSQMRG---PPPPVRATETITSDRSHQLMMRDMQQKP 347
L +P T + P R+S S+ + PP P A +T TSD+ +QL + + +P
Sbjct: 349 LPLPPTVANQTPVADGHQGRNSISRQKSDPLPPTPTEAIQTPTSDK-NQLQGKPLPLRP 406
>SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10)
Length = 463
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 151 RRCSRLPTCSSRRTFSVRSWCRHESSDAIS 62
RRC L +S +T + + RHES D ++
Sbjct: 416 RRCQSLNYVTSSKTCEINNSTRHESEDDVT 445
>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 195 TAMSAGPPEPPRCARD-SGSQMRGPPPPV 278
TA S GPP R +GS++R PP PV
Sbjct: 213 TAGSIGPPPRTSTPRSRTGSRVRTPPTPV 241
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 151 RRCSRLPTCSSRRTFSVRSWCRHESSDAIS 62
RRC L +S +T + + RHES D ++
Sbjct: 1013 RRCQSLNYVTSSKTCEINNSTRHESEDDVT 1042
>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
Length = 213
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 340 CCISRIISWWDRSEVMVSVARTGGGGP 260
CC+ WD S +V R GG GP
Sbjct: 161 CCVGAWRFIWDDSSKLVRANREGGPGP 187
>SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = -1
Query: 325 IISWWDRSEVMV----SVARTGGGGPRIWDPLSRAHLGG 221
+++WW +V + ++ TG GP D HL G
Sbjct: 113 VVAWWVNLKVRIFTFTTLGETGASGPTSTDGYKATHLNG 151
>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1133
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 204 SAGPPEPPRCARDSGSQMRGPPPPVRATETITSD 305
S PP PPR S ++G P P R T + TS+
Sbjct: 41 STSPPPPPRRV-PSPKLLKGLPRPPRITPSNTSE 73
>SB_48239| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 116
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 204 SAGPPEPPRCARDSGSQMRGPPPPVRATETITSD 305
S PP PPR S ++G P P R T + TS+
Sbjct: 41 STSPPPPPRRV-PSPKLLKGLPRPPRITPSNTSE 73
>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 195 TAMSAGPPEPPRCARDSGSQMRGPPPP 275
+A + PP PP G++ PPPP
Sbjct: 750 SAANVPPPPPPPAVPGEGARPPPPPPP 776
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 233 RPGQRVPDARPATACTRHR 289
RP RV ARP TA R R
Sbjct: 932 RPSSRVASARPGTAAVRQR 950
>SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 26.2 bits (55), Expect = 7.8
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +3
Query: 105 ENVRLEEHVGSLLQRRDHLLAVNARLAIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRA 284
E+V L + LQ + AVN +I S P+ A S RG PP
Sbjct: 187 EDVDLSSYTDQYLQTKTSEKAVNTDTSITQDVGSVVQARKPKRAHKSKPVFRGVPPS--- 243
Query: 285 TETITSDRSHQL 320
SDR H+L
Sbjct: 244 ----RSDRRHKL 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,180
Number of Sequences: 59808
Number of extensions: 338763
Number of successful extensions: 1827
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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