Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0652
(358 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 85 1e-17
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 85 1e-17
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 85 1e-17
AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical ... 33 0.059
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 31 0.31
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 0.31
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 31 0.31
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 31 0.31
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 31 0.31
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 30 0.55
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 29 0.72
U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical pr... 29 0.95
U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z73425-5|CAA97787.1| 427|Caenorhabditis elegans Hypothetical pr... 28 1.7
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 28 1.7
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical pr... 27 2.9
AY152852-1|AAN62580.1| 770|Caenorhabditis elegans suppressor of... 27 2.9
AL032636-3|CAA21604.1| 770|Caenorhabditis elegans Hypothetical ... 27 2.9
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 27 3.9
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 27 3.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 3.9
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 27 3.9
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 27 3.9
Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical pr... 27 5.1
AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical... 27 5.1
AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein. 27 5.1
AC084197-9|AAK95894.1| 322|Caenorhabditis elegans Hypothetical ... 27 5.1
Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical p... 26 6.7
Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical p... 26 6.7
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 26 6.7
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 26 6.7
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 26 6.7
U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical pr... 26 6.7
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 26 6.7
AF100656-9|AAF99966.1| 215|Caenorhabditis elegans Hypothetical ... 26 6.7
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 26 6.7
AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q... 26 6.7
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 26 6.7
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 26 6.7
AC087079-5|ABC48240.1| 367|Caenorhabditis elegans Hypothetical ... 26 6.7
AC087079-4|ABC48239.1| 370|Caenorhabditis elegans Hypothetical ... 26 6.7
AC006632-3|AAK85467.1| 183|Caenorhabditis elegans Hypothetical ... 26 6.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 26 8.9
U61953-17|AAK82912.1| 278|Caenorhabditis elegans Hypothetical p... 26 8.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 26 8.9
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 26 8.9
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 26 8.9
AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical ... 26 8.9
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 26 8.9
AF292053-1|AAG41149.1| 278|Caenorhabditis elegans 4F223 protein. 26 8.9
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 26 8.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 26 8.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 26 8.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 26 8.9
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 26 8.9
AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical ... 26 8.9
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 85.4 bits (202), Expect = 1e-17
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +3
Query: 3 LLERQWEQGSQFLMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLLQRRDHLLAVNARL 182
LLERQW+QGS LM A HFD+A LLSCL QL++EN RLEE++ L +RRDHL A+N+RL
Sbjct: 596 LLERQWDQGSSLLMANA-HFDVAQLLSCLFQLKSENFRLEENLSGLRKRRDHLFALNSRL 654
Query: 183 A 185
A
Sbjct: 655 A 655
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 85.4 bits (202), Expect = 1e-17
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +3
Query: 3 LLERQWEQGSQFLMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLLQRRDHLLAVNARL 182
LLERQW+QGS LM A HFD+A LLSCL QL++EN RLEE++ L +RRDHL A+N+RL
Sbjct: 364 LLERQWDQGSSLLMANA-HFDVAQLLSCLFQLKSENFRLEENLSGLRKRRDHLFALNSRL 422
Query: 183 A 185
A
Sbjct: 423 A 423
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 85.4 bits (202), Expect = 1e-17
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +3
Query: 3 LLERQWEQGSQFLMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLLQRRDHLLAVNARL 182
LLERQW+QGS LM A HFD+A LLSCL QL++EN RLEE++ L +RRDHL A+N+RL
Sbjct: 596 LLERQWDQGSSLLMANA-HFDVAQLLSCLFQLKSENFRLEENLSGLRKRRDHLFALNSRL 654
Query: 183 A 185
A
Sbjct: 655 A 655
>AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical
protein Y116A8C.13 protein.
Length = 833
Score = 33.1 bits (72), Expect = 0.059
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 180 DERSLQADGHDAVADYPHAPPDARSPCGAGAGMRVV 73
D+ L+AD D V + PP+A P A AG+R +
Sbjct: 750 DDEELEADVTDEVVEDSQEPPEATKPAVAAAGLRTI 785
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 39 LMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLL 143
+++ +++ D+A++LS L L+ + LEEH G LL
Sbjct: 303 ILQLSENMDVATVLSRLQVLKNDRTVLEEHSGWLL 337
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 204 SAGPPEPPRCARDSGSQMRGPPPP 275
S PP PPR +R GS PPPP
Sbjct: 121 SPPPPPPPRKSRAGGSSPPPPPPP 144
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.7 bits (66), Expect = 0.31
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 204 SAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQLMMRDMQ 338
SA PP PP S PPPP A + +SDR MR ++
Sbjct: 153 SAPPPPPPPPPVSVPSSKPTPPPPPPAQQKPSSDREQFRTMRPLR 197
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQLMMRDMQ 338
PP PP + S PPPP + + SDR MR ++
Sbjct: 158 PPPPPPVSVPSSKPTPPPPPPAQQKPSFQSDREQFRTMRPLR 199
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 39 LMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLL 143
+++ +++ D+A++LS L L+ + LEEH G LL
Sbjct: 303 ILQLSENMDVATVLSRLQVLKNDRTVLEEHSGWLL 337
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 29.9 bits (64), Expect = 0.55
Identities = 18/73 (24%), Positives = 29/73 (39%)
Frame = +3
Query: 93 QLRTENVRLEEHVGSLLQRRDHLLAVNARLAIPLTAMSAGPPEPPRCARDSGSQMRGPPP 272
Q+ T + H S+++ H ++ + +P + P PP + RGPPP
Sbjct: 569 QIPTHSTSYGNHEDSVIEEEPHGSVISQQQVVPPRPVQ---PVPPMSV---ATVTRGPPP 622
Query: 273 PVRATETITSDRS 311
P R I S
Sbjct: 623 PTRPASVIAPSSS 635
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 192 LTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITS 302
+T ++ PP P A+ +R PPPP R T+ S
Sbjct: 210 ITLLAQPPPPPAPPAQTQAPLIRVPPPPARFIPTLKS 246
>U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical
protein W03B1.8 protein.
Length = 705
Score = 29.1 bits (62), Expect = 0.95
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -1
Query: 205 DMAVRGIARRAFTASRWSRRCSRLPTCSSRRTFSVRSWCRHESSDAISKCWACSIKNCDP 26
DM + AR S + R+ R+P+C T S WCRH + K I N
Sbjct: 415 DMTLDDAARLNHRWSVFDRKFLRVPSCVYE-TKSHLGWCRHTGLSPLGKYKMAIIGNSWT 473
Query: 25 CSH*R 11
+H R
Sbjct: 474 ANHAR 478
>U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical
protein ZK154.6a protein.
Length = 148
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 127 MWVVCYSVVTICLQ*TLVSRYLSPPCLRVPPNHQDAPG 240
MWV C++ + CL+ +S Y++ C P APG
Sbjct: 45 MWVTCHTSLENCLEACYMSCYITDLCNDQPDMAACAPG 82
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 163 SRWSRRCSRLPTCSSRRTFSVRSWC 89
SRWS+RCSR C+ + + C
Sbjct: 100 SRWSKRCSRDEDCTHQEELCIEGKC 124
>Z73425-5|CAA97787.1| 427|Caenorhabditis elegans Hypothetical
protein F12F6.9 protein.
Length = 427
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +1
Query: 217 PNHQDAPGTAGPRCAARHRLYAPPRPSPLTGPTSL*CVICNKSPAER 357
P + G GPR R+ +Y PP P GP+ L V N P ER
Sbjct: 196 PGAKGGSGLQGPR-GKRNYIYGPPGPMGQPGPSGLDGVSGN--PGER 239
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 177 RLAIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQLMMRDMQ 338
++ P M AGPP PP+ + Q G P + + + +S Q+ R MQ
Sbjct: 79 QMPYPSPQMRAGPP-PPQQQQQQHFQQMGIPQQQQPQQFTPNGQSMQMQQRPMQ 131
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQ 317
P S PP R S RGPPPP + + D SHQ
Sbjct: 311 PPRRSSGAPPSSASNRRPVESSSRGPPPP--PSSSSRRDYSHQ 351
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQ 317
P S PP R S RGPPPP + + D SHQ
Sbjct: 311 PPRRSSGAPPSSASNRRPVESSSRGPPPP--PSSSSRRDYSHQ 351
>Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical
protein ZC302.1 protein.
Length = 728
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 174 RSLQADGHDAVADYPHAPPDARSPCGAGAG 85
R + +DG + + D P PP +RS G G
Sbjct: 686 RQIDSDGFEIINDSPSPPPASRSTRGKARG 715
>AY152852-1|AAN62580.1| 770|Caenorhabditis elegans suppressor of
presenilin 5 protein.
Length = 770
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 192 EVSRDERSLQADGHDAVADYPHAP--PDARSP 103
EV D + + D ++AVAD P+AP P+A+ P
Sbjct: 705 EVDIDGKIPEKDENEAVADIPNAPNAPNAQKP 736
>AL032636-3|CAA21604.1| 770|Caenorhabditis elegans Hypothetical
protein Y40B1B.6 protein.
Length = 770
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 192 EVSRDERSLQADGHDAVADYPHAP--PDARSP 103
EV D + + D ++AVAD P+AP P+A+ P
Sbjct: 705 EVDIDGKIPEKDENEAVADIPNAPNAPNAQKP 736
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +1
Query: 196 PPCLRVPPNHQDAPG------TAGPRCAARHRLYAPPRPSPLTGPTSL*CVICNKSPA 351
P C R PP PG + GPR H+++AP + P P CV C + PA
Sbjct: 101 PRCPRGPPGPPGRPGQRGTSGSPGPRGQDNHQVHAPIQ-CPRQQPG---CVKCPRGPA 154
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
F43C1.1 protein.
Length = 1036
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 190 LSPPCLRVPPNHQDAPGTAGPRCAARHRLYAPPRPSPLTGPT 315
L+ P L +P H P P A RHR +PP P PL T
Sbjct: 931 LAVPALILPEYHPSPP-VPPPIPAIRHRTPSPP-PPPLPSST 970
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRA---TETITSDRSHQLMMRDMQ 338
P+ A A PP PP +G+ PPPP A + T + QL MR Q
Sbjct: 227 PVNAHGA-PPPPPLPPVGAGAPPPPPPPPPPAQLMASSGTPSLAEQLKMRSQQ 278
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 189 PLTAMSA-GPPEPPRCARDSGSQMRGPPPPVR 281
PL M G P PPR S MRG PPP+R
Sbjct: 1458 PLGMMRGRGGPPPPR---GMNSPMRGMPPPMR 1486
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRA---TETITSDRSHQLMMRDMQ 338
P+ A A PP PP +G+ PPPP A + T + QL MR Q
Sbjct: 213 PVNAHGA-PPPPPLPPVGAGAPPPPPPPPPPAQLMASSGTPSLAEQLKMRSQQ 264
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRA---TETITSDRSHQLMMRDMQ 338
P+ A A PP PP +G+ PPPP A + T + QL MR Q
Sbjct: 213 PVNAHGA-PPPPPLPPVGAGAPPPPPPPPPPAQLMASSGTPSLAEQLKMRSQQ 264
>Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 323 HKLVGPVRGDGLGGAYRR 270
+K++GP GDG GG +RR
Sbjct: 178 NKILGPSLGDGDGGGHRR 195
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P + S PP PP SG+ PPPP
Sbjct: 787 PPSTSSVPPPPPPLPPISSGAPPPPPPPP 815
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P + S PP PP SG+ PPPP
Sbjct: 787 PPSTSSVPPPPPPLPPISSGAPPPPPPPP 815
>Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical
protein F10B5.6 protein.
Length = 655
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 183 RDERSLQADGHDAVADYPHAP 121
+D RSL GH V+D PH P
Sbjct: 322 KDSRSLLELGHQLVSDDPHIP 342
>AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 323 HKLVGPVRGDGLGGAYRR 270
+K++GP GDG GG +RR
Sbjct: 178 NKILGPSLGDGDGGGHRR 195
>AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein.
Length = 655
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 183 RDERSLQADGHDAVADYPHAP 121
+D RSL GH V+D PH P
Sbjct: 322 KDSRSLLELGHQLVSDDPHIP 342
>AC084197-9|AAK95894.1| 322|Caenorhabditis elegans Hypothetical
protein Y73B6BL.29 protein.
Length = 322
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -1
Query: 214 GPADMAVRGIARRAFTASRWSRRCSRLPTCSSRRTFSVRS 95
G V + + + S + RC + P CS R FS S
Sbjct: 24 GGTGFGVMDLLNQTISTSIFGSRCEQTPNCSDRLKFSPSS 63
>Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical
protein F46B6.3b protein.
Length = 368
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 226 QDAPGTAGPRCAARHRLYAPPRPSP 300
QD P PR + RL PPRPSP
Sbjct: 274 QDGPRV--PRDKKKERLAKPPRPSP 296
>Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical
protein F46B6.3a protein.
Length = 329
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 226 QDAPGTAGPRCAARHRLYAPPRPSP 300
QD P PR + RL PPRPSP
Sbjct: 274 QDGPRV--PRDKKKERLAKPPRPSP 296
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 26.2 bits (55), Expect = 6.7
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 90 HQLRTENVRLEEHVGSLLQRRDHLLAVNARLAIPLTAMSAGPPEPPRCARDSGSQMRGPP 269
HQ + + GS +HLLA + R S PP S ++ G P
Sbjct: 1602 HQNYSHRFGYSRNRGSRYDETEHLLAQDNRSPSSPRYRSMARASPP-----SPAERYGHP 1656
Query: 270 PPVRATETITSDRS-HQLMMRD 332
P R TE+ S RS +Q+ +RD
Sbjct: 1657 PRYR-TESPPSSRSEYQMSIRD 1677
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 213 PPEPPRCAR--DSGSQMRGPPPP 275
PP+PP+ R +S GPPPP
Sbjct: 837 PPQPPQQRRRTESSGYRGGPPPP 859
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 26.2 bits (55), Expect = 6.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 78 LSCLHQLRTENV----RLEEHVGSLLQRRDHLLAVNARLAIPLTAMSAGPPEPPRCARDS 245
L + QL ++V + + H Q++ H V + + + + PP PP A+ S
Sbjct: 540 LHIIKQLEAQHVNHIAQTKSHHQQHTQQQQHHQTVPTQSSSIVQVVQPIPPPPPTLAQSS 599
Query: 246 GSQMRGPPPPVRA 284
+ PPPP+ A
Sbjct: 600 SN--IPPPPPIPA 610
>U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical
protein F47D12.9a protein.
Length = 545
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 258 RGPPPPVRATETITSDRSHQLMMRDMQQKP 347
R PPPVR E +T+ ++ + ++ +P
Sbjct: 21 RWEPPPVRLNELVTATEPEEIPLPKLEDQP 50
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3
Query: 302 RGDGLGGAYRRWRAAHLGPAVPGASWWFGGTRRHG 198
RG G GG +R R G G FGG R G
Sbjct: 17 RGGGGGGGFRGGRGGDRGGGFRGGRGGFGGGGRGG 51
>AF100656-9|AAF99966.1| 215|Caenorhabditis elegans Hypothetical
protein F49F1.10 protein.
Length = 215
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 244 AGPRCAARHRLYAPPRPS-PLTGP 312
+G R RHR PPRPS P+T P
Sbjct: 41 SGRRGGGRHRPPRPPRPSKPVTTP 64
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 162 LAVNARLAIPLTAMSAGPPEPPR----CARDSGSQMRGPP 269
L+ R+A TA S GPP PP C + ++GPP
Sbjct: 245 LSTYPRVASSSTASSPGPPGPPGPPGVCHASQCTGIQGPP 284
>AF043704-2|AAX88816.1| 407|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 72
protein.
Length = 407
Score = 26.2 bits (55), Expect = 6.7
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +3
Query: 93 QLRTENVRL---EEHVGSLLQRRDHLLAVNARLAIPL-TAMSAGPPEPPRCARDSGSQMR 260
++ TEN +L EE+V S L ++ + PL T PP PP +
Sbjct: 311 KIETENHQLHQIEENVISALSTPTSTISASPSPPSPLPTTSGPSPPSPPAPPHEFSLHGA 370
Query: 261 GPPPPVRATETITSD 305
GPP + ++ I +
Sbjct: 371 GPPGLMPPSDDIVDE 385
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 213 PP--EPPRCARDSGSQMRGPPPPVRATET 293
PP EP + + G+ R PPPP + T T
Sbjct: 77 PPTGEPQDLSAEEGNASRRPPPPPKGTGT 105
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 214 PPNHQDAPGTAGPRCAARHRLYAPPRPSPLTGP 312
PP PG AGP A YA P P+ GP
Sbjct: 237 PPGPAGPPGPAGP---AGEDAYAQPSPAGTPGP 266
>AC087079-5|ABC48240.1| 367|Caenorhabditis elegans Hypothetical
protein Y37E3.5b protein.
Length = 367
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITSD 305
PP+PP + + + PP A+ TI SD
Sbjct: 265 PPDPPSDPKSASVHIEESPPMSLASSTIPSD 295
>AC087079-4|ABC48239.1| 370|Caenorhabditis elegans Hypothetical
protein Y37E3.5a protein.
Length = 370
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITSD 305
PP+PP + + + PP A+ TI SD
Sbjct: 265 PPDPPSDPKSASVHIEESPPMSLASSTIPSD 295
>AC006632-3|AAK85467.1| 183|Caenorhabditis elegans Hypothetical
protein F28A10.10 protein.
Length = 183
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 3 LLERQWEQGSQFLMEQAQHFDIASLLSCLHQLRTENVRLEEHVGSLLQRRDHL 161
L + WE FL E + + + L RTE V + + +++ RD L
Sbjct: 111 LKDAPWEVSVDFLEEMKMYAEHKAAGRFLETTRTEGVSTSDSICKIIRDRDEL 163
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVR 281
PP PPR +G M PPPP R
Sbjct: 349 PPPPPRYP-SAGPGMYPPPPPSR 370
>U61953-17|AAK82912.1| 278|Caenorhabditis elegans Hypothetical
protein R08C7.12 protein.
Length = 278
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 243 SGSQMRGPPPPVRATETITSDRSHQLMM 326
+ S ++ PPPP T +HQL++
Sbjct: 39 AASYLQAPPPPYTPTTAFHPHNAHQLLL 66
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVR 281
PP PPR +G M PPPP R
Sbjct: 359 PPPPPRYP-SAGPGMYPPPPPSR 380
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 193 SPPCLRVPPNHQDAPGTAGPR 255
S PC+ PP Q A G GP+
Sbjct: 158 SEPCIICPPGPQGAVGQQGPK 178
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 193 SPPCLRVPPNHQDAPGTAGPR 255
S PC+ PP Q A G GP+
Sbjct: 158 SEPCIICPPGPQGAVGQQGPK 178
>AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical
protein Y48C3A.12 protein.
Length = 675
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 223 HQDAPGTAGPRCAARHRLYAPPRPSPLTGPTSL 321
+ P + P A APP+PSP T +SL
Sbjct: 622 YTSTPTASIPAATAITTTTAPPKPSPTTSESSL 654
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 25.8 bits (54), Expect = 8.9
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -1
Query: 265 GPRIWDPLSRAHLGGSGGPADMAVRGIARR---AFTASRWSRRCSRL--PTCSSRRTFSV 101
G + D ++A+LGG M +RG+ + A WS + P C+SR S
Sbjct: 595 GKSLEDKENKANLGGGDSLMPMNLRGLVKDHSIGVDAKEWSTPFGKPEGPKCASRMRQSK 654
Query: 100 RS 95
RS
Sbjct: 655 RS 656
>AF292053-1|AAG41149.1| 278|Caenorhabditis elegans 4F223 protein.
Length = 278
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 243 SGSQMRGPPPPVRATETITSDRSHQLMM 326
+ S ++ PPPP T +HQL++
Sbjct: 39 AASYLQAPPPPYTPTTAFHPHNAHQLLL 66
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 207 AGPPEPPRCARDSGSQMRGPPPPVRA 284
A PP PP C G PPP A
Sbjct: 30 APPPPPPACGCGGGGGGYAAPPPAYA 55
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P A S PP PP + PPPP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGS----QMRGPPPP 275
P A S PP PPR + +GS Q G PPP
Sbjct: 291 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P A S PP PP + PPPP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGS----QMRGPPPP 275
P A S PP PPR + +GS Q G PPP
Sbjct: 312 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P A S PP PP + PPPP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGS----QMRGPPPP 275
P A S PP PPR + +GS Q G PPP
Sbjct: 297 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 240 DSGSQMRGPPPPVR 281
DSG+ R PPPPVR
Sbjct: 285 DSGTIQRQPPPPVR 298
>AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical
protein Y50D4C.3 protein.
Length = 605
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 222 PPRCARDSGSQMRGPPPP 275
PPR + G +GPPPP
Sbjct: 478 PPRGGQFHGGSQQGPPPP 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,671,332
Number of Sequences: 27780
Number of extensions: 244897
Number of successful extensions: 1516
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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