Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0652
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.82 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.82 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   2.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 291  SRWRVQAVAGRASGTRCPGRILVVRGDPQ 205
            +R+ ++ +A   +G   P   L+VR +PQ
Sbjct: 976  TRYTIRVIAEGPAGRSVPSAELIVRTEPQ 1004


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 291  SRWRVQAVAGRASGTRCPGRILVVRGDPQ 205
            +R+ ++ +A   +G   P   L+VR +PQ
Sbjct: 972  TRYTIRVIAEGPAGRSVPSAELIVRTEPQ 1000


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 209 GSPRTTKMRPGQRVPDARPATACTRHRDHH 298
           GSP TT   P     ++  A   T H  HH
Sbjct: 446 GSPATTAAPPQLPTEESVDALCNTLHHWHH 475


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 207 AGPPEPPRCARDSGS 251
           A PP+P R ++D G+
Sbjct: 251 ATPPQPDRTSKDQGT 265


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 165  AVNARLAIPLTAMSAGPPEPPR 230
            +V +   IP++     PP PPR
Sbjct: 1844 SVGSARNIPVSGSPEPPPPPPR 1865


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = -1

Query: 97  SWCRHESSDAISKCWACSIKNCD 29
           +W ++E+   I+  +   I  CD
Sbjct: 109 TWAKNENCSGITSAYKIEIDMCD 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,516
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)