Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0652
(358 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 32 0.098
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 32 0.098
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 32 0.13
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 31 0.23
At5g06805.1 68418.m00769 reverse transcriptase-related low simil... 30 0.52
At1g61080.1 68414.m06877 proline-rich family protein 30 0.52
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta... 29 0.69
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 29 1.2
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 28 1.6
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 28 1.6
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 28 1.6
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 28 1.6
At3g09070.1 68416.m01066 glycine-rich protein similar to hypothe... 28 1.6
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 28 1.6
At2g42800.1 68415.m05299 leucine-rich repeat family protein cont... 28 2.1
At4g10840.2 68417.m01764 kinesin light chain-related low similar... 27 2.8
At4g10840.1 68417.m01765 kinesin light chain-related low similar... 27 2.8
At1g32290.1 68414.m03975 hypothetical protein 27 2.8
At5g63490.1 68418.m07970 CBS domain-containing protein / octicos... 27 3.7
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 27 3.7
At4g26960.1 68417.m03879 expressed protein 27 3.7
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 27 3.7
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 27 3.7
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 27 3.7
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 27 3.7
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 27 3.7
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 27 3.7
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp... 27 3.7
At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CS... 27 4.9
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 27 4.9
At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid t... 27 4.9
At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid t... 27 4.9
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 26 6.4
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 26 6.4
At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein si... 26 6.4
At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein si... 26 6.4
At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein si... 26 6.4
At3g12660.1 68416.m01578 fasciclin-like arabinogalactan family p... 26 6.4
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 26 6.4
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 26 6.4
At1g80310.1 68414.m09402 expressed protein 26 6.4
At1g49270.1 68414.m05524 protein kinase family protein contains ... 26 6.4
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 26 6.4
At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family... 26 6.4
At5g13760.1 68418.m01604 expressed protein similar to unknown pr... 26 8.5
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 26 8.5
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 26 8.5
At2g43060.1 68415.m05343 expressed protein similar to cDNA bHLH ... 26 8.5
At2g11890.1 68415.m01276 expressed protein 26 8.5
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain... 26 8.5
At1g69280.1 68414.m07943 expressed protein 26 8.5
At1g21326.1 68414.m02666 VQ motif-containing protein contains PF... 26 8.5
At1g21320.1 68414.m02664 VQ motif-containing protein contains PF... 26 8.5
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 32.3 bits (70), Expect = 0.098
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITS 302
PPEPP+ + S + PPPPV A + +S
Sbjct: 353 PPEPPKFLKVSSKKASAPPPPVPAPQMPSS 382
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P SAGPP PP A GS PPPP
Sbjct: 377 PQMPSSAGPPRPPPPAPPPGSGGPKPPPP 405
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 32.3 bits (70), Expect = 0.098
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITS 302
PPEPP+ + S + PPPPV A + +S
Sbjct: 353 PPEPPKFLKVSSKKASAPPPPVPAPQMPSS 382
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P SAGPP PP A GS PPPP
Sbjct: 377 PQMPSSAGPPRPPPPAPPPGSGGPKPPPP 405
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/35 (51%), Positives = 18/35 (51%)
Frame = +3
Query: 198 AMSAGPPEPPRCARDSGSQMRGPPPPVRATETITS 302
A SA PP PP S PPPPV ETITS
Sbjct: 103 AESAAPPPPPATTTPS------PPPPVNKEETITS 131
>At1g24150.1 68414.m03047 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 725
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 186 IPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRS 311
IP+ + PP PP +++G PPPP++ T ++S S
Sbjct: 251 IPVKQSATPPPPPPPKLKNNGPSPP-PPPPLKKTAALSSSAS 291
>At5g06805.1 68418.m00769 reverse transcriptase-related low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278
Length = 594
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 180 DERSLQADGHDAVADYPHAPPDARSPCGAGAGMRVVMLYRSAGL 49
D R+L A GHDA+ + PPD P A + + V GL
Sbjct: 4 DTRALSATGHDALMEDVGRPPDGCVPMAAVSWVDKVQKSNGGGL 47
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQLMMRDMQ 338
PP PPR +G+ GPPPP A ++ ++ + R Q
Sbjct: 622 PPPPPRMGMANGAA--GPPPPPGAARSLRPKKAATKLKRSTQ 661
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 186 IPLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
+PL + PP PP A +G+ PPPP
Sbjct: 597 MPLANGATPPPPPPPMAMANGAAGPPPPPP 626
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 186 IPLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
+PL + PP PP GS PPPP
Sbjct: 485 MPLKHFAPPPPTPPAFKPLKGSAPPPPPPP 514
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
PL A PP PP R + + PPPP
Sbjct: 515 PLPTTIAAPPPPPPPPRAAVAPPPPPPPP 543
>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 416
Score = 29.5 bits (63), Expect = 0.69
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 172 TLVSRYLSPPCLRVPPNHQDAPGTAGPRCAARHRLYAPPRPSP-LTGPTSL 321
T+++R L P C P Q AP A P R +YA P PSP GP S+
Sbjct: 315 TMLTRSLQPRC---PGPQQFAPLLAPPDTVPRDVMYA-PAPSPDFDGPGSI 361
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
P+ + + PP PP + GS PPPP
Sbjct: 44 PVPSSYSPPPPPPSSSGGGGSYYYSPPPP 72
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 201 MSAGPPEPPRCARDSGSQMRGPPPP 275
M GPP PP R Q GPPPP
Sbjct: 178 MGRGPP-PPYGMRPPPQQFSGPPPP 201
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Frame = +3
Query: 207 AGPPEPPRCARDS----GSQMRGPPPP 275
+GPP P R G MRGPPPP
Sbjct: 196 SGPPPPQYGQRPMIPPPGGMMRGPPPP 222
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 201 MSAGPPEPPRCARDSGSQMRGPPPP 275
M GPP PP R Q GPPPP
Sbjct: 178 MGRGPP-PPYGMRPPPQQFSGPPPP 201
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Frame = +3
Query: 207 AGPPEPPRCARDS----GSQMRGPPPP 275
+GPP P R G MRGPPPP
Sbjct: 196 SGPPPPQYGQRPMIPPPGGMMRGPPPP 222
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITSDRSH 314
PP P Q+R PPPP IT+ H
Sbjct: 81 PPSNPATTNSGHHQLRPPPPPPPPLSAITTTGHH 114
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = -1
Query: 244 LSRAHLGGSGG-PADMAVRGIARRAFTASRWSRRCSRLPTCSSRRTFSVRSW----CRHE 80
LSR +GG P + V G + R + W R RL TC + S+ + HE
Sbjct: 388 LSREVTELAGGLPLGLKVMGSSLRGMSKQEWKRTLPRLRTCLDGKIESILMFSYEALSHE 447
Query: 79 SSDAISKCWAC 47
D + C AC
Sbjct: 448 DKD-LFLCIAC 457
>At3g09070.1 68416.m01066 glycine-rich protein similar to
hypothetical protein GB:AAD32765 [Arabidopsis thaliana]
Length = 685
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 274 GGGGPRIWDPLSRAHLGGSGGPADMAVRGIARRAFTASRWS 152
GGGGPR+ S SGG + V G+ RR +SR+S
Sbjct: 594 GGGGPRMVRSNSNVSWRSSGGGSARKVNGLDRRN-KSSRYS 633
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 204 SAGPPEPPRCARDSGSQMRGPPPPVRATETITSDRS 311
SA P PP + S PPPPV+ ++S S
Sbjct: 250 SAPTPSPPPPIKKGSSPSPPPPPPVKKVGALSSSAS 285
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVR 281
PP PP A + PPPP++
Sbjct: 239 PPPPPSIAVKQSAPTPSPPPPIK 261
>At2g42800.1 68415.m05299 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; and grail
Length = 462
Score = 27.9 bits (59), Expect = 2.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 275 RRWRAAHLGPAVPGASW 225
++WR +H P PG+SW
Sbjct: 54 QQWRQSHPNPCAPGSSW 70
>At4g10840.2 68417.m01764 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515 TPR Domain
Length = 531
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 177 RLAIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRAT 287
R+A+P T + PP P S + R P P R+T
Sbjct: 20 RVAVPDTQPLSNPPRTPMKKTPSSTPSRSKPSPNRST 56
>At4g10840.1 68417.m01765 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515 TPR Domain
Length = 609
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 177 RLAIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRAT 287
R+A+P T + PP P S + R P P R+T
Sbjct: 20 RVAVPDTQPLSNPPRTPMKKTPSSTPSRSKPSPNRST 56
>At1g32290.1 68414.m03975 hypothetical protein
Length = 80
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 316 WWDRSEVMVSV--ARTGGGGPRIWDPLSRAHLGG 221
WW + V+ V R GGGG R W P+ GG
Sbjct: 28 WWCPAVVVAGVDNGRIGGGGGRCWWPVLVVAGGG 61
>At5g63490.1 68418.m07970 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 543
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 268 GGPRIWDPLSRAHLGGSGGPADMAVRGI--ARRAFTASR 158
GGPR ++ A L G DMA RG+ RR+ T SR
Sbjct: 5 GGPRRSLSVTTASLHGKKKSMDMAERGLDTGRRSLTVSR 43
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPP 275
PP PP+ AR S R PPPP
Sbjct: 208 PPPPPQAAR---SYKRSPPPP 225
>At4g26960.1 68417.m03879 expressed protein
Length = 156
Score = 27.1 bits (57), Expect = 3.7
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 132 GSLLQRRDHLLAVNARLAIPLTAMSAGPPEPPRCARDSGSQMRGPPPPVRAT-ETITSDR 308
G+L Q R+ + NAR PLT + P +PP + +S P+ AT +TIT D+
Sbjct: 51 GALAQIRNARIN-NARSNFPLTRSLSDPVDPPSSSSES---------PIAATPQTITMDQ 100
Query: 309 SHQLMMR 329
L+ +
Sbjct: 101 MPHLLSK 107
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -1
Query: 313 WDRSEVMVSVARTGGGGPRIWDPLSRAHLGGSGGPADMAVRGIARRAFTASRWSRRCSR 137
+D S + V +R G R D SR GSG + V G R TA W +C R
Sbjct: 69 FDGSRITVEASRGAPRGSR--DNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYR 125
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -1
Query: 313 WDRSEVMVSVARTGGGGPRIWDPLSRAHLGGSGGPADMAVRGIARRAFTASRWSRRCSR 137
+D S + V +R G R D SR GSG + V G R TA W +C R
Sbjct: 28 FDGSRITVEASRGAPRGSR--DNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYR 84
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -1
Query: 313 WDRSEVMVSVARTGGGGPRIWDPLSRAHLGGSGGPADMAVRGIARRAFTASRWSRRCSR 137
+D S + V +R G R +D SR G+G + V G R TA W +C R
Sbjct: 28 FDGSRITVEFSRGAPRGSRDFD--SRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYR 84
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -1
Query: 313 WDRSEVMVSVARTGGGGPRIWDPLSRAHLGGSGGPADMAVRGIARRAFTASRWSRRCSR 137
+D S + V +R G R +D SR G+G + V G R TA W +C R
Sbjct: 39 FDGSRITVEFSRGAPRGSRDFD--SRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYR 95
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -1
Query: 313 WDRSEVMVSVARTGGGGPRIWDPLSRAHLGGSGGPADMAVRGIARRAFTASRWSRRCSR 137
+D S + V +R G R +D SR G+G + V G R TA W +C R
Sbjct: 69 FDGSRITVEFSRGAPRGSRDFD--SRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYR 125
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRA 284
PP+PP + S + PPPPV +
Sbjct: 535 PPQPPMPSPSPPSPIYSPPPPVHS 558
>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein weak similarity to
spliceosome-associated-protein 114 [Echinococcus
multilocularis] GI:11602721; contains Pfam profile
PF01805: Surp module
Length = 285
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVR-----ATETITSDRSHQLMMRDMQQK 344
P PP A D M+ PPPP R E IT + DM +K
Sbjct: 234 PKPPPGFASDQKPTMKYPPPPPRKYAAILPEWITGKELETIKEGDMDEK 282
>At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CSN
complex subunit 2 (CSN2) proteasome, COP9-complex and
eIF3-domain protein; identical to CSN complex subunit 2
[Arabidopsis thaliana] GI:18056655; identical to cDNA
CSN complex subunit 2 (CSN2) GI:18056654
Length = 439
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 3 LLERQWEQGSQFLMEQAQHFDIAS---LLSCLHQLRTENVRLEEHV 131
+ ERQWE+ + E +++D A + CL L N+ +E V
Sbjct: 242 MAERQWEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEV 287
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -1
Query: 145 CSRLPTCSSRRTFSVRSWCRHESSDAISKCWACSIKNCDPCS 20
C P C + C E S + C++CS + PCS
Sbjct: 215 CPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCSSQAHSPCS 256
>At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 202 CLRVPPNHQDAPGTAGPRCAARHRLYAPPRPSP 300
C+ P H A G+ PR +H AP P P
Sbjct: 17 CIIYLPQHSLACGSCNPRKGGKHSPKAPKLPVP 49
>At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 202 CLRVPPNHQDAPGTAGPRCAARHRLYAPPRPSP 300
C+ P H A G+ PR +H AP P P
Sbjct: 17 CIIYLPQHSLACGSCNPRKGGKHSPKAPKLPVP 49
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 198 AMSAGPPEPPRCARD-SGSQMRGPPPPVRATETITSDRSHQLMMRDMQQKPS*K 356
A SA PP PP+ S S PP P T ++S + L + +++ P+ K
Sbjct: 786 APSAPPPPPPKLGTKLSPSGPNVPPTPALPTGPLSSGKGRMLRV-NLKNSPAKK 838
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 187 YLSPPCLRVPPNHQDAPGTAGPRCAARHRLYAPPRPSPLTGP 312
Y PP + PP +P P + +++PP P P+ P
Sbjct: 580 YSPPPPVHSPPPPVHSPPPPAPVHSPPPPVHSPPPPPPVYSP 621
>At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -2
Query: 123 PPDA---RSPCGAGAGMRVVMLYRSAGLAPL 40
PPDA SP G A R++ Y LAPL
Sbjct: 460 PPDALGPASPLGGNANARIIFSYHLPILAPL 490
>At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -2
Query: 123 PPDA---RSPCGAGAGMRVVMLYRSAGLAPL 40
PPDA SP G A R++ Y LAPL
Sbjct: 460 PPDALGPASPLGGNANARIIFSYHLPILAPL 490
>At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -2
Query: 123 PPDA---RSPCGAGAGMRVVMLYRSAGLAPL 40
PPDA SP G A R++ Y LAPL
Sbjct: 460 PPDALGPASPLGGNANARIIFSYHLPILAPL 490
>At3g12660.1 68416.m01578 fasciclin-like arabinogalactan family
protein similar to fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|13377776|gb|AAK20857;
Length = 255
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 171 NARLAIPLTAMSAGPPEPPRCARDSGSQMRGPP 269
NA A PL+ +S+ PP P D G PP
Sbjct: 177 NAPTASPLSPVSS-PPRPAESPNDDGQDFDEPP 208
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITS 302
P T S P P R P PV ATET+T+
Sbjct: 108 PQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTT 145
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 189 PLTAMSAGPPEPPRCARDSGSQMRGPPPPVRATETITS 302
P T S P P R P PV ATET+T+
Sbjct: 108 PQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTT 145
>At1g80310.1 68414.m09402 expressed protein
Length = 464
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 147 AVADYPHAPPDARSPCGAGAGMRVVMLYRSAGLAPLKTAIPAP 19
AV++ PH P + GA +++L + ++ L IP P
Sbjct: 92 AVSESPHLTPSQIAAAGASTAATLLLLGATGAMSFLYNIIPLP 134
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 204 SAGPPEPPRCARDSGSQMRGPPPP 275
S+ P PP DS SQ + PPPP
Sbjct: 76 SSSSPPPPS---DSSSQSQSPPPP 96
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 180 LAIPLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
LA P PP PP +R S PPPP
Sbjct: 591 LAQPPPPRPPPPPPPPPSSRSIPSPSAPPPPP 622
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +1
Query: 175 LVSRYLSPPCLRVPPNHQDAPGTAGPRCAARHRLYAPPRPSP 300
L SR + PP + PP P P + APP P P
Sbjct: 582 LPSRSIPPPLAQPPPPRPPPPPPPPPSSRSIPSPSAPPPPPP 623
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 183 AIPLTAMSAGPPEPPRCARDSGSQMRGPPPP 275
+IP + PP PP +G++ + PPP
Sbjct: 611 SIPSPSAPPPPPPPPPSFGSTGNKRQAQPPP 641
>At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 161
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +3
Query: 216 PEPPRCARDS-GSQMRGPPPP 275
P PP DS GS GPPPP
Sbjct: 85 PSPPYGGGDSSGSSFYGPPPP 105
>At5g13760.1 68418.m01604 expressed protein similar to unknown
protein (gb AAF63775.1)
Length = 569
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 216 PEPPRCARDSGSQMRGPPPPVRATET 293
P PP A+ S R PPPP +T
Sbjct: 72 PPPPNLAQPLRSSSRQPPPPPPRPQT 97
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 187 IARRAFTASRWSRRCSRLPTCSSRRTFSVRSW 92
+ARR FT++R SR S S FS +W
Sbjct: 905 VARRLFTSTRGSRSSSFGWVYSGSHNFSAAAW 936
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 213 PPEPPRCARDSGSQMRGPPPPVRATETITSDRSHQ 317
PP P S S P P++ T+ + + +HQ
Sbjct: 441 PPPPWEAQSPSSSPQYSPTHPMQVTQVVITTHTHQ 475
>At2g43060.1 68415.m05343 expressed protein similar to cDNA bHLH
transcription factor (bHLH zeta gene) GI:32563005
Length = 156
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -1
Query: 292 VSVARTGGGGPRIWDPLSRAHLGGSGGPADMAVRGIARRAFTASRWSRRCSRLP 131
VS+AR GG R+W SRA L + + VR R+ +S+ R R P
Sbjct: 54 VSMARAAGGSSRLW---SRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRAP 104
>At2g11890.1 68415.m01276 expressed protein
Length = 210
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 LMEQAQHFDIASLLSCLH--QLRTENVRLEEHVGSLLQRRDHLLAVNARLAIPLTAMSAG 212
L+ A H + +LL+ H L N + L RR AV + A+SA
Sbjct: 9 LLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRR----AVLRLRFLQNAAVSAA 64
Query: 213 PPEPPRC 233
P PPRC
Sbjct: 65 SPSPPRC 71
>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 174
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +3
Query: 111 VRLEEHVGSLLQRRDHLLAVNARLAI---PL--TAMSAGPPEPPRCARDSGSQMRGPPPP 275
VR +E + +L++ D + ++ + PL T +A PP S S+ R PP
Sbjct: 78 VRSDEDLKNLMEEYDLAITAQVKIHVFLSPLKSTRTTANSSPPPSTTSSSSSKSRSRSPP 137
Query: 276 VRAT-ETITS 302
+T ET S
Sbjct: 138 SPSTPETCPS 147
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Frame = -1
Query: 145 CSRLPTCSSRRTFSVR-------SWCRHESSDAISKC-WA-CSIKNCDPCSH*RSSS 2
C RLP+C R SWCR S D S C W C +C C SSS
Sbjct: 314 CCRLPSCGYNFFCCKRLKCCPCFSWCRWPSCDYNSSCGWLFCCHWSCWSCCCCSSSS 370
>At1g21326.1 68414.m02666 VQ motif-containing protein contains
PF05678: VQ motif
Length = 239
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 PEPPRCARDSGSQMRGPPPPV 278
P+PP+ + SQ R PP PV
Sbjct: 41 PQPPQTHQQEPSQSRPPPGPV 61
>At1g21320.1 68414.m02664 VQ motif-containing protein contains
PF05678: VQ motif
Length = 235
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 PEPPRCARDSGSQMRGPPPPV 278
P+PP+ + SQ R PP PV
Sbjct: 41 PQPPQTHQQEPSQSRPPPGPV 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,342,169
Number of Sequences: 28952
Number of extensions: 236749
Number of successful extensions: 1231
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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