Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0651
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   0.70 
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    28   1.6  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   2.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   3.7  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 428 MKLQNSVYMFLGIFQR-SSLSETYSLFN*SYKFRNVVEFCFFENPFFSNIIVNHQF 264
           +KL N + M+   F    +  +TYSL   S +  N+    +F N   SN+I  +Q+
Sbjct: 345 IKLCNHILMYQATFNEVKNFLQTYSLNMLSIEMENIEGSLYFGNAQLSNLICVNQY 400


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +3

Query: 369 RERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLCV 548
           +ER    + KK  Y++LQ   +E  Q +  M D  +   L  I  Q     ++  + L  
Sbjct: 62  KERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAE 121

Query: 549 VSRE 560
           + R+
Sbjct: 122 IERD 125


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 315 EFYNITELIRLVKERICLRERRPLKDS-KKHVYRVLQFHEEELTQMVSTMSDGWKFEQLI 491
           E+ +I  L+ +V +    ++ R L+    KHV R+L   +  L+     +S  W+ + +I
Sbjct: 86  EWSSIDSLVPIVVDLPSKKQNRLLQSCITKHVDRLLDLCKRNLSTFTIDISSSWR-QNII 144

Query: 492 NIGSQYNYGNDEHAEFLCVVSRECGSTLN 578
                    N+E  EF C  +   G  LN
Sbjct: 145 E--------NNEQKEFECTSTAITGCLLN 165


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 730 LFKTVYSFHNMYTSPQSYDPKKITKSKI 647
           L + V++ +N+ T   SYDPK +  SK+
Sbjct: 711 LQRDVFTLYNLNTPNLSYDPKDLDISKV 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,294
Number of Sequences: 5004
Number of extensions: 59860
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)