BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0651 (741 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 58 1e-08 10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 53 3e-07 02_04_0590 - 24154366-24155742 44 2e-04 07_03_0093 + 13330867-13332312 38 0.008 05_01_0553 + 4849535-4849553,4850727-4851913 29 3.9 07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 29 5.1 06_03_0626 - 22857989-22858088,22858163-22858307,22859198-22859561 28 6.8 02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 9.0 >03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368, 3074461-3074616,3074793-3074876,3075069-3075115, 3075305-3075378,3075634-3075692,3076149-3076208, 3076826-3076906,3077033-3077086 Length = 303 Score = 57.6 bits (133), Expect = 1e-08 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Frame = +3 Query: 57 SSKQWVKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYF 233 SS V LN+GG + TT TL R+P+S L + L D TG +DRD +F Sbjct: 8 SSSSPVLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPD-TGMVFVDRDGKHF 66 Query: 234 SPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERI 362 VLN+LR G + ++ + +L EAE+Y + L + +R+ Sbjct: 67 RHVLNWLRDGAVPDMSESEYQQLLREAEYYQLLGLADCINDRL 109 >10_08_0144 - 15176059-15176112,15176375-15176455,15176711-15176770, 15177220-15177278,15177412-15177485,15177595-15177641, 15177852-15177935,15178051-15178212,15178264-15178467, 15178541-15178647,15178746-15178773 Length = 319 Score = 52.8 bits (121), Expect = 3e-07 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = +3 Query: 72 VKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLN 248 + LN+GG+ + TT TL RDP S L + + E GA +DRD F VLN Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLN 64 Query: 249 YLRHGKLVINNDIAEEGVLEEAEFYNI 329 +LR G + D +L EAE+Y + Sbjct: 65 WLRDGAVPALADAEYRQLLREAEYYRL 91 >02_04_0590 - 24154366-24155742 Length = 458 Score = 43.6 bits (98), Expect = 2e-04 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Frame = +3 Query: 72 VKLNVGGTYFLTTKTTLCR-DPNSFLYRLVQEDSDLISDRD---ETGA--YLIDRDPTYF 233 V+LNVGG F T +TL ++ L ++ + D E GA Y IDRDP F Sbjct: 8 VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYFIDRDPECF 67 Query: 234 SPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVK 353 + +L+ LR G L + +A+ + EA +Y + + +R + Sbjct: 68 AVLLDLLRTGGLHVPPHVADGVLCREALYYGLLDRVRAAR 107 >07_03_0093 + 13330867-13332312 Length = 481 Score = 37.9 bits (84), Expect = 0.008 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Frame = +3 Query: 72 VKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLNY 251 V LNVGG F TT TL R S ++ + + +DRDP F+ +L++ Sbjct: 6 VTLNVGGEVFQTTVATLSRAGAS-------SPLASLAPTPASAPHFLDRDPRLFATLLSF 58 Query: 252 LRHGKLV---INNDIAEEGVLEEAEFYNI 329 LR G+L ++D +L EA + + Sbjct: 59 LRRGRLAPTSPDSDPPSPALLAEARHFGV 87 >05_01_0553 + 4849535-4849553,4850727-4851913 Length = 401 Score = 29.1 bits (62), Expect = 3.9 Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 3/139 (2%) Frame = +3 Query: 159 QEDSDLISDRDETGAYLIDRDPTYFSPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITEL 338 QED ++ T +I P Y + ++ G ++ ++ + +E + ++ N + Sbjct: 10 QEDGSSNHSKNSTLVTIIRERPDY-KTLTHHDLLGHIIAHDMLMQESK-DVIQYINQSST 67 Query: 339 IRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYG 518 + KE + L+ + ++ + + +EE+ V + GS +Y Sbjct: 68 ASIKKEDLALKAKEEEEEENRKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYS 127 Query: 519 N---DEHAEFLCVVSRECG 566 N H+ +C V +E G Sbjct: 128 NKSSGRHSARVCYVCKEPG 146 >07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101, 27020254-27020325,27021008-27021061,27021707-27021856, 27022206-27022547,27022651-27024684,27024706-27024947, 27025658-27026235,27026329-27028183,27028533-27028851, 27028980-27029417 Length = 2126 Score = 28.7 bits (61), Expect = 5.1 Identities = 17/75 (22%), Positives = 38/75 (50%) Frame = +3 Query: 288 AEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQMVSTMSD 467 A E VL + ++ T+++ KE + R R + DS+ + L + L + + Sbjct: 101 AREIVLSQIPYFCKTDIVVKCKEALKKR-LRAINDSRAQKRKALSQPNKRLRSLSEHVPH 159 Query: 468 GWKFEQLINIGSQYN 512 G++ + L+++ ++YN Sbjct: 160 GYRRKSLLDVLTRYN 174 >06_03_0626 - 22857989-22858088,22858163-22858307,22859198-22859561 Length = 202 Score = 28.3 bits (60), Expect = 6.8 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 Query: 237 VKNMSGLYLLNKRQSHPCLISSHYP 163 V+ M G L ++R+ HP LI+ H P Sbjct: 108 VQRMGGPQLFSQRRGHPALIARHRP 132 >02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930, 1884442-1884666,1884844-1885224,1885282-1885989, 1886546-1886839,1887211-1887709,1887949-1888721 Length = 1257 Score = 27.9 bits (59), Expect = 9.0 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +3 Query: 3 DCSDFMEENIQKFNNERRSSKQWVKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSD 173 +C + ++ I+ + VK N G YF+ TLC P+ L+R + + D Sbjct: 664 ECIEQLQFLIEDAQKDEALHVSEVKSNDLGFYFMRFINTLCNIPSVSLFRTLSSNDD 720 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,517,545 Number of Sequences: 37544 Number of extensions: 323710 Number of successful extensions: 816 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 814 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1957111448 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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