Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0651
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307...    58   1e-08
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767...    53   3e-07
02_04_0590 - 24154366-24155742                                         44   2e-04
07_03_0093 + 13330867-13332312                                         38   0.008
05_01_0553 + 4849535-4849553,4850727-4851913                           29   3.9  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    29   5.1  
06_03_0626 - 22857989-22858088,22858163-22858307,22859198-22859561     28   6.8  
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    28   9.0  

>03_01_0394 +
           3073903-3073954,3074052-3074161,3074234-3074368,
           3074461-3074616,3074793-3074876,3075069-3075115,
           3075305-3075378,3075634-3075692,3076149-3076208,
           3076826-3076906,3077033-3077086
          Length = 303

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = +3

Query: 57  SSKQWVKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYF 233
           SS   V LN+GG  + TT  TL  R+P+S L  +      L    D TG   +DRD  +F
Sbjct: 8   SSSSPVLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPD-TGMVFVDRDGKHF 66

Query: 234 SPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERI 362
             VLN+LR G +   ++   + +L EAE+Y +  L   + +R+
Sbjct: 67  RHVLNWLRDGAVPDMSESEYQQLLREAEYYQLLGLADCINDRL 109


>10_08_0144 -
           15176059-15176112,15176375-15176455,15176711-15176770,
           15177220-15177278,15177412-15177485,15177595-15177641,
           15177852-15177935,15178051-15178212,15178264-15178467,
           15178541-15178647,15178746-15178773
          Length = 319

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +3

Query: 72  VKLNVGGTYFLTTKTTLC-RDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLN 248
           + LN+GG+ + TT  TL  RDP S L   +   +       E GA  +DRD   F  VLN
Sbjct: 5   ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLN 64

Query: 249 YLRHGKLVINNDIAEEGVLEEAEFYNI 329
           +LR G +    D     +L EAE+Y +
Sbjct: 65  WLRDGAVPALADAEYRQLLREAEYYRL 91


>02_04_0590 - 24154366-24155742
          Length = 458

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
 Frame = +3

Query: 72  VKLNVGGTYFLTTKTTLCR-DPNSFLYRLVQEDSDLISDRD---ETGA--YLIDRDPTYF 233
           V+LNVGG  F T  +TL     ++ L  ++    +     D   E GA  Y IDRDP  F
Sbjct: 8   VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYFIDRDPECF 67

Query: 234 SPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVK 353
           + +L+ LR G L +   +A+  +  EA +Y + + +R  +
Sbjct: 68  AVLLDLLRTGGLHVPPHVADGVLCREALYYGLLDRVRAAR 107


>07_03_0093 + 13330867-13332312
          Length = 481

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +3

Query: 72  VKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSDLISDRDETGAYLIDRDPTYFSPVLNY 251
           V LNVGG  F TT  TL R   S            ++    +  + +DRDP  F+ +L++
Sbjct: 6   VTLNVGGEVFQTTVATLSRAGAS-------SPLASLAPTPASAPHFLDRDPRLFATLLSF 58

Query: 252 LRHGKLV---INNDIAEEGVLEEAEFYNI 329
           LR G+L     ++D     +L EA  + +
Sbjct: 59  LRRGRLAPTSPDSDPPSPALLAEARHFGV 87


>05_01_0553 + 4849535-4849553,4850727-4851913
          Length = 401

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
 Frame = +3

Query: 159 QEDSDLISDRDETGAYLIDRDPTYFSPVLNYLRHGKLVINNDIAEEGVLEEAEFYNITEL 338
           QED      ++ T   +I   P Y   + ++   G ++ ++ + +E   +  ++ N +  
Sbjct: 10  QEDGSSNHSKNSTLVTIIRERPDY-KTLTHHDLLGHIIAHDMLMQESK-DVIQYINQSST 67

Query: 339 IRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYG 518
             + KE + L+ +   ++  +      +  +EE+   V       +       GS  +Y 
Sbjct: 68  ASIKKEDLALKAKEEEEEENRKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYS 127

Query: 519 N---DEHAEFLCVVSRECG 566
           N     H+  +C V +E G
Sbjct: 128 NKSSGRHSARVCYVCKEPG 146


>07_03_1503 +
           27017933-27018063,27019668-27019727,27019996-27020101,
           27020254-27020325,27021008-27021061,27021707-27021856,
           27022206-27022547,27022651-27024684,27024706-27024947,
           27025658-27026235,27026329-27028183,27028533-27028851,
           27028980-27029417
          Length = 2126

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/75 (22%), Positives = 38/75 (50%)
 Frame = +3

Query: 288 AEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQMVSTMSD 467
           A E VL +  ++  T+++   KE +  R  R + DS+    + L    + L  +   +  
Sbjct: 101 AREIVLSQIPYFCKTDIVVKCKEALKKR-LRAINDSRAQKRKALSQPNKRLRSLSEHVPH 159

Query: 468 GWKFEQLINIGSQYN 512
           G++ + L+++ ++YN
Sbjct: 160 GYRRKSLLDVLTRYN 174


>06_03_0626 - 22857989-22858088,22858163-22858307,22859198-22859561
          Length = 202

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 237 VKNMSGLYLLNKRQSHPCLISSHYP 163
           V+ M G  L ++R+ HP LI+ H P
Sbjct: 108 VQRMGGPQLFSQRRGHPALIARHRP 132


>02_01_0282 +
           1882844-1883413,1883519-1883644,1883733-1883930,
           1884442-1884666,1884844-1885224,1885282-1885989,
           1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   DCSDFMEENIQKFNNERRSSKQWVKLNVGGTYFLTTKTTLCRDPNSFLYRLVQEDSD 173
           +C + ++  I+    +       VK N  G YF+    TLC  P+  L+R +  + D
Sbjct: 664 ECIEQLQFLIEDAQKDEALHVSEVKSNDLGFYFMRFINTLCNIPSVSLFRTLSSNDD 720


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,517,545
Number of Sequences: 37544
Number of extensions: 323710
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)