Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0651
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 489 INIGSQYNYGNDEHAEFLCVVSRE 560
           +N   Q+  G++  AEF+C+ + E
Sbjct: 177 VNDVVQHQSGSEAEAEFVCIATPE 200


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/59 (18%), Positives = 25/59 (42%)
 Frame = +3

Query: 369 RERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLC 545
           RER       +  YR  +   +E ++         + + + ++ + YNY N+ + +  C
Sbjct: 43  REREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYC 101


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/59 (18%), Positives = 25/59 (42%)
 Frame = +3

Query: 369 RERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLC 545
           RER       +  YR  +   +E ++         + + + ++ + YNY N+ + +  C
Sbjct: 43  REREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYC 101


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/59 (18%), Positives = 25/59 (42%)
 Frame = +3

Query: 369 RERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLC 545
           RER       +  YR  +   +E ++         + + + ++ + YNY N+ + +  C
Sbjct: 43  REREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYC 101


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 712 SFHNMYTSPQSYDPKKI 662
           SFH + ++   YDPK I
Sbjct: 223 SFHRLTSNTFDYDPKYI 239


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 315 EFYNITELIRLVKERICLRERRPLKDSKKH 404
           +FY I+  I    +RI L  R P+K+  K+
Sbjct: 10  KFYRISPQILKNDKRIYLSPRTPIKNVYKN 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,305
Number of Sequences: 438
Number of extensions: 4132
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)