Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0649
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.8  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 247 HREGLPWHLPSARCLHPKGESVEEAPFR 164
           HRE + W + + R ++ +GES   + +R
Sbjct: 290 HREDVRWVMIALRQMYDRGESKGSSCYR 317


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 186 LSPFGCKHRAEGRCHGRPSRCP 251
           L P+    R   RCHG    CP
Sbjct: 336 LWPYTMYFRMPHRCHGNLQSCP 357


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 500 GWLKNGRLSS 471
           GWLK G+LSS
Sbjct: 124 GWLKKGKLSS 133


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 390 SRSPYW*NQCRRHVERIHRLSSHQC 464
           +  P+  ++CR    R H L  H+C
Sbjct: 243 NEKPFECDKCRGRFRRRHHLVHHKC 267


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 380 LRWLKESLLVKPMQKTRRTYPSVVFTSMLASMR 478
           ++W K++ L       R+T P+ V T+    +R
Sbjct: 286 MKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVR 318


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 380 LRWLKESLLVKPMQKTRRTYPSVVFTSMLASMR 478
           ++W K++ L       R+T P+ V T+    +R
Sbjct: 286 MKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVR 318


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 204 CIRKVKVLKRPRFE 163
           C+R     KRP+FE
Sbjct: 192 CLRTCSSAKRPKFE 205


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 114 PLASTAFAVKFHQLRGSRNGASSTLS 191
           PLA  A    FH  + S  GA S  S
Sbjct: 54  PLADAAVGKGFHPWKKSPQGAPSPSS 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,617
Number of Sequences: 336
Number of extensions: 2629
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)