Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0649
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 152 3e-38
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 151 7e-38
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.1
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 2.6
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 4.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 4.5
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 4.5
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 5.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 5.9
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 5.9
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 5.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 5.9
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 7.8
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 152 bits (369), Expect = 3e-38
Identities = 70/145 (48%), Positives = 108/145 (74%), Gaps = 3/145 (2%)
Frame = -1
Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + +
Sbjct: 89 EDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRAN 148
Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
+KT YAQ +Q+RAIR+KM ++I ++ +RE+V KLIP+ I ++IE+A I+PL+
Sbjct: 149 QVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQ 208
Query: 210 DVCIRKVKVLKRPRFE---ILEVDG 145
+V +RKVK+LK P+ + +LE+ G
Sbjct: 209 NVLVRKVKILKAPKHDAQKLLELHG 233
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 151 bits (366), Expect = 7e-38
Identities = 70/145 (48%), Positives = 105/145 (72%), Gaps = 3/145 (2%)
Frame = -1
Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++
Sbjct: 89 EDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVN 148
Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
+KT YAQ +Q+RAI +KM ++I ++E+V KLIP+ I + IEKA + IYPL+
Sbjct: 149 QVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQ 208
Query: 210 DVCIRKVKVLKRPRFE---ILEVDG 145
+V +RKVK+LK P+ + +LE+ G
Sbjct: 209 NVFVRKVKILKAPKHDAQKLLELHG 233
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 327 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 196
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 481 LPFFNHPPELIGCEVHAVEVAEHITS 558
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 549 VLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 445
V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 117 VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 421 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 329
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Frame = +3
Query: 144 FHQLRGSRNGASSTLSPFGCK-----HRAEGRCHG-RPSRCPWQWS 263
FH L GS+ S F CK + + RCHG P P +S
Sbjct: 26 FHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPCVAPLSYS 71
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 148 INFEDLETGPLQHFHLSDANIAQRVDA 228
+ FED G + FH+ AN + DA
Sbjct: 20 VKFEDSNRGTITDFHIETANNEEEKDA 46
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -1
Query: 504 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 367
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -1
Query: 414 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 286
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 151 NFEDLETGPLQHFHLSDANIAQRVDAMAGLLDVLGN 258
NFE L + Q +LS+ N + +DA+A LGN
Sbjct: 70 NFEALMSLQAQDSNLSEQNTSIHLDALASSSIALGN 105
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 525 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 427
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 502 PELIGCEVHAVEVAEHITSL 561
PELI C H EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,091
Number of Sequences: 5004
Number of extensions: 42996
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -