Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0649
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 179 1e-45
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 177 7e-45
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 177 7e-45
04_04_0018 - 22178972-22179179,22179264-22179502 30 1.1
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 2.6
06_03_0290 - 19193707-19193752,19193822-19194090 28 4.6
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 28 4.6
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 28 6.0
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 8.0
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 179 bits (436), Expect = 1e-45
Identities = 83/145 (57%), Positives = 113/145 (77%), Gaps = 3/145 (2%)
Frame = -1
Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
E VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT +
Sbjct: 89 EDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPN 148
Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL+
Sbjct: 149 QVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQ 208
Query: 210 DVCIRKVKVLKRPRFE---ILEVDG 145
+V +RKVK+LK P+F+ ++EV G
Sbjct: 209 NVFVRKVKILKAPKFDLGKLMEVHG 233
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 177 bits (430), Expect = 7e-45
Identities = 82/145 (56%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
Frame = -1
Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
E VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +
Sbjct: 89 EDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPN 148
Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL+
Sbjct: 149 QVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQ 208
Query: 210 DVCIRKVKVLKRPRFE---ILEVDG 145
+V +RKVK+LK P+F+ ++EV G
Sbjct: 209 NVFVRKVKILKAPKFDLGKLMEVHG 233
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 177 bits (430), Expect = 7e-45
Identities = 83/145 (57%), Positives = 111/145 (76%), Gaps = 3/145 (2%)
Frame = -1
Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
E VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +
Sbjct: 89 EDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPN 148
Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+PL+
Sbjct: 149 QVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQ 208
Query: 210 DVCIRKVKVLKRPRFE---ILEVDG 145
+V IRKVK+LK P+F+ ++EV G
Sbjct: 209 NVFIRKVKILKAPKFDLGKLMEVHG 233
>04_04_0018 - 22178972-22179179,22179264-22179502
Length = 148
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 120 ASTAFAVKFHQLRGSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTC 278
AS A A + +R RN S LS G + + C S+ PW +S + TC
Sbjct: 48 ASEAMATEKLGVRVERNPPESRLSELGVREWPKWGCE--KSKFPWTYSAKETC 98
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 288 EVVNKLIPDSIAKDIEKACHGIYPLRD 208
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 545 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 456
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 147 HQLRGSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQ--ESTCSPP 287
H+L + ASS+ S C H GRC+ P CP+ S+ E+T P
Sbjct: 16 HRLGPANGAASSSTSGKVCIHWRAGRCNRFP--CPYLHSELPEATAKRP 62
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 84 LRPFRLVSGFPLASTAFAVKFHQLRGSRNGASST 185
LRP+R S L ST+ +++FH G+ + +SST
Sbjct: 447 LRPYRNCSICTLVSTSRSLRFHGGGGAASSSSST 480
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 174 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 290
A++ SPF + GRC PS P S S+ +PPP
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,098,574
Number of Sequences: 37544
Number of extensions: 314874
Number of successful extensions: 985
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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