Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0649
         (570 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   214   2e-57
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   4.0  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   5.3  
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           23   9.3  
AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.        23   9.3  
AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding pr...    23   9.3  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  214 bits (522), Expect = 2e-57
 Identities = 98/137 (71%), Positives = 118/137 (86%)
 Frame = -1

Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
           E V GR+VL NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCIGFT KDS+
Sbjct: 92  ESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSM 151

Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
           SQRKTCYAQH+Q++ IR KM  II R++T+++L+ VV KL+PDSIAKDIEKAC  +YPL 
Sbjct: 152 SQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLH 211

Query: 210 DVCIRKVKVLKRPRFEI 160
           DV IRKVKVLK+PRF++
Sbjct: 212 DVYIRKVKVLKKPRFDL 228


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 193 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 279
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +3

Query: 168 NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 284
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 564 VQGRNVLCNFHGMDLTTDKLRWMVKKWQT 478
           +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 206 IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


>AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.
          Length = 286

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 564 VQGRNVLCNFHGMDLTTDKLRWMVKKWQT 478
           +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 131 IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 159


>AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP29 protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 342 RKKMCEIITRDVTNSELRE 286
           + K+  +IT+D+   ELRE
Sbjct: 106 KHKVLHVITKDIREHELRE 124


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,451
Number of Sequences: 2352
Number of extensions: 11555
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53824896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)