Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0649
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   167   6e-42
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    29   3.1  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  167 bits (405), Expect = 6e-42
 Identities = 79/137 (57%), Positives = 101/137 (73%)
 Frame = -1

Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
           E VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I FT K   
Sbjct: 87  EDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVN 146

Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
             +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL+
Sbjct: 147 QVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQ 206

Query: 210 DVCIRKVKVLKRPRFEI 160
           +V IRKVK++KRP+ ++
Sbjct: 207 EVYIRKVKIIKRPKVDL 223


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = -1

Query: 408 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACH 229
           T + S+S     + QH Q RA++K M E +   V N ++ E+ N      + K +E    
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGN-----VVKKGLEDGTL 251

Query: 228 GIYPLRDVCIRKVKVLKRPRFEILE 154
               + + C  K     RP F IL+
Sbjct: 252 SEIQIEEFCKHKT----RPNFSILQ 272


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 240 KACHGIYPLRDVCIRKVKVLKRPRFEILEVDGT 142
           K  HG  P +D C+  + + + PR  ++  D T
Sbjct: 279 KCAHGSSPYKDRCLNNINICEAPRQPVISSDYT 311


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -1

Query: 366 QHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVK 187
           QH Q RA++K M E +   V N ++ E+ N      + K +E        + + C    K
Sbjct: 211 QHLQNRAVQKTMIEQLESAVRNQDVMEMGN-----VVKKGLENGTLSEIQIEEFC----K 261

Query: 186 VLKRPRFEILE 154
              RP F IL+
Sbjct: 262 HTTRPNFSILQ 272


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 159 GSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 290
           G+   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 99  GNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 229 MAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTH 333
           ++GL+   GNG++ +L      FRV DV C +  H
Sbjct: 184 ISGLIPAFGNGIKEKLED--GGFRVLDVGCGEGFH 216


>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 386 WLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQST 550
           W  + LL    Q     YP + + +    + V  FL+I+  +  +  +PW L ST
Sbjct: 70  WFNQLLLTA--QLIGGYYPFLWYATASYPLHVAVFLSINSIIETIIDLPWDLYST 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,584
Number of Sequences: 27780
Number of extensions: 251463
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)