Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0649
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           184   4e-47
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   183   6e-47
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   0.95 
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    30   1.2  
At3g09000.1 68416.m01053 proline-rich family protein                   28   5.0  
At2g46850.1 68415.m05846 expressed protein                             28   5.0  
At5g38550.1 68418.m04661 jacalin lectin family protein similar t...    27   8.8  
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    27   8.8  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  184 bits (448), Expect = 4e-47
 Identities = 85/145 (58%), Positives = 115/145 (79%), Gaps = 3/145 (2%)
 Frame = -1

Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
           E VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + + 
Sbjct: 89  EDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRAN 148

Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
             ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL+
Sbjct: 149 QVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQ 208

Query: 210 DVCIRKVKVLKRPRFE---ILEVDG 145
           +V IRKVK+LK P+F+   ++EV G
Sbjct: 209 NVFIRKVKILKAPKFDLGKLMEVHG 233


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  183 bits (446), Expect = 6e-47
 Identities = 81/137 (59%), Positives = 111/137 (81%)
 Frame = -1

Query: 570 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL 391
           E VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + + 
Sbjct: 89  EDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRAN 148

Query: 390 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 211
             ++TCYAQ +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL+
Sbjct: 149 QVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQ 208

Query: 210 DVCIRKVKVLKRPRFEI 160
           +V IRKVK+LK P+F++
Sbjct: 209 NVFIRKVKILKAPKFDL 225


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +1

Query: 319 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 483
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 205 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGV 372
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S + +
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEINL 480


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 28/109 (25%), Positives = 55/109 (50%)
 Frame = -2

Query: 545 SATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANARRATP 366
           S++S A   +P SSG    + R +S+P    R+       +++   P+ T  +N+R +TP
Sbjct: 137 SSSSVAGLRRPSSSG----SSRSTSRPATPTRRSTTP---TTSTSRPVTTRASNSRSSTP 189

Query: 365 STLRSEQSERKCVKSLHATSLTLNSGRW*TS*FLTPLPRTSRRPAMAST 219
           ++  +  + R    +    + T +SG   ++   TP  R++ RP+ AS+
Sbjct: 190 TSRATLTAARATTSTAAPRTTTTSSG---SARSATP-TRSNPRPSSASS 234


>At2g46850.1 68415.m05846 expressed protein 
          Length = 633

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 87  RPFRLVSGFPL-ASTAFAVKFHQLRGSRNGASSTLSPFGCKHRAEGRCHGR 236
           R F  +  FP  A+  F++ F  + G  +   S+L  FGC+      C GR
Sbjct: 103 RQFNDLRSFPFSANQFFSISFENVIGLYDCEDSSLCKFGCETNDLFGCDGR 153


>At5g38550.1 68418.m04661 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 594

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 262 LHCQGHREGLPW 227
           L CQG R+GLPW
Sbjct: 299 LECQGDRKGLPW 310


>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 223 DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSD 354
           D    +LD+LGN V+    H  P   V+D+  +    ++  CSD
Sbjct: 78  DGTVRILDLLGNQVKEFRAHTAP---VNDINFDTEGEYIGSCSD 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,930
Number of Sequences: 28952
Number of extensions: 238023
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)