Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0646
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 598 KKIKFWFSIEYVIIPKQNLP 539
           K++K WF    V   K++LP
Sbjct: 159 KQVKIWFQNRRVKYKKEDLP 178


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -2

Query: 182 HRAYFFNGSFSVLKSPVFSLFTSCSSAFVSARQSALCFFKFS 57
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -2

Query: 182 HRAYFFNGSFSVLKSPVFSLFTSCSSAFVSARQSALCFFKFS 57
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 322 PHQTAWNYVKCYHEKDPKHALFL*IHNPTQPFHT 423
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,431
Number of Sequences: 336
Number of extensions: 3005
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)