Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0646
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    31   0.70 
11_02_0137 - 8702661-8703495,8703820-8704628                           27   8.7  

>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 16  VCVVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 195
           VC+V+      +  E +KK  ++  +E +    LV  L   D+   N  L +   C  I 
Sbjct: 46  VCIVIGYCEGGDMSEAIKKANSNYFSEERLCMWLVQLLMALDYLHVNHILHRDVKCSNI- 104

Query: 196 SQLMTKDGKFK-KDVALAKVPNAED 267
              +TKD   +  D  LAKV  ++D
Sbjct: 105 --FLTKDQNIRLGDFGLAKVLTSDD 127


>11_02_0137 - 8702661-8703495,8703820-8704628
          Length = 547

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = -1

Query: 405 WIMYLQEKSVLRVFLVVAFHVIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLL 226
           W+ Y+    V    L +    +    + +V F    S NQL +F   F + H    D + 
Sbjct: 51  WLAYVGADMVAVYALGLISQNVQSVNISSVGF--SRSSNQLAFFWVPFLLIHLGGQDTMT 108

Query: 225 EFSVLGHQLRFDQHT*SVLLQRFI 154
            FS+  + L + +H  ++ +Q F+
Sbjct: 109 AFSIKDNNL-WLRHLLNLCIQVFL 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,856
Number of Sequences: 37544
Number of extensions: 299263
Number of successful extensions: 768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)