Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0646
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.54 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   6.6  
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                28   6.6  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   27   8.8  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 262 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 390
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 151 QS*SRLSSVCSPVVHQLSSRRDSRLCVSSSSPSAHL*GP 35
           +S S  SSVC  V+H+LS+ R   +C S     A+   P
Sbjct: 435 RSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -1

Query: 381 SVLRVFLVVAFHVIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFSVLGHQ 202
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 201 LR 196
           ++
Sbjct: 84  IK 85


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +1

Query: 202 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 330
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 474 DYIGEYCNLVWCYYS-NFNLYLFGKFCFGIITYSIENQNLIF 596
           D + EY +L W   S  F  +LFG   FGI++     + ++F
Sbjct: 84  DLVCEYSSLSWATNSIMFTGWLFGNIVFGILSDKYGRRKVLF 125


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 211 KDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK 375
           K+G+ +K+    K  N E ++KVE+    CLA   + P +TA       ++ +PK
Sbjct: 152 KEGEMEKEYPSCKFANRESEVKVER---TCLA---SLPVRTATTTTMVQNQDEPK 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,035,716
Number of Sequences: 59808
Number of extensions: 362864
Number of successful extensions: 1045
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)