Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0645
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.038
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.27 
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 31   0.81 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 31   0.81 
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   5.7  
SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -3

Query: 408 DVVAVSQAPSPESNPDSPLPVTTM 337
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 399 AVSQAPSPESNPDSPLPVTTM 337
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 398 PFLRLPLRNRTLIPRYP 348
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   CLSQRLSHACLSASRIKAIPRMA 70
           CLSQRLSHACLS S      RMA
Sbjct: 139 CLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   CLSQRLSHACLSASRIKAIPRMA 70
           CLSQRLSHACLS S      RMA
Sbjct: 115 CLSQRLSHACLSISTRTVKLRMA 137


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 6   CLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 131
           CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 450 CLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 6   CLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 131
           CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 869 CLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 417 PSLDVVAVSQAPSPESNPDSPLP 349
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 360 NQGSIPEREPEKRLPHPRKAAGAQIT-HSRHG-EVVTKNNDTGLLRGLVIGMSTL 518
           N+ +IP+RE E R      AAGA I  H +H      K+   G  R L +G   L
Sbjct: 10  NEKTIPQREVE-RTKKAATAAGASIAEHIKHAIAEQVKHAKPGFSRSLTLGQKLL 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,493
Number of Sequences: 59808
Number of extensions: 374761
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)