Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0645
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   5.0  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 420 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 316
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 55  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 159
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 437 GNLRACCLPWMW*PFLRLPLR 375
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 97  SYSVTWITVVILELIHAIRTLTSDGMS 177
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 292 ERCVAGT*PCDLQKLSRFIKINDFG 218
           ER V+ + P DL    RF+K N FG
Sbjct: 440 ERFVSNSSPMDLDATQRFLKYNRFG 464


>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 222 KSLILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLS 347
           K L + N   +C    +V    ++ +C+I F W F +L +++
Sbjct: 8   KFLTINNFSRYCLKIVKVHIIWITIICIIYFNWRFKKLDFMA 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,002
Number of Sequences: 27780
Number of extensions: 266388
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)