Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0643
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  40   0.003
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)                     31   1.1  
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 30   2.5  
SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)                   29   4.3  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    29   4.3  
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                   29   5.7  
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    28   7.5  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              28   7.5  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
 Frame = +1

Query: 4   LLAAATAEVIHEGTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLE 174
           LL  A+  ++  G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L 
Sbjct: 221 LLLFASFALLVCGPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLR 280

Query: 175 GD----VVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVL 333
            D    VV        DG  K I G A    D     KL V   F  +  +GS  +L
Sbjct: 281 KDGKIGVVNSNRDKKPDGELKQITGYA-YQPDPEVPGKLKV--HFDTVPVEGSYWIL 334


>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 791

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/110 (18%), Positives = 42/110 (38%)
 Frame = +1

Query: 124 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGE 303
           N  +  G+  + EY L    +++ N  I D + K      ++ +  +K   +        
Sbjct: 397 NSMQGKGRRRNREYLLHVSYLEIYNEEIRDLLVKNTRSNLEIKEHPDKGMYVKGLSSITV 456

Query: 304 ISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAK 453
              +   ++L     N ++   C   D  +SH +F+  L  N    G+ +
Sbjct: 457 DCYEDMAEILEIGSANRSVGSTCMNTDSSRSHSIFIIDLQVNVNKGGEGE 506


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 116 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 241
           NF T      +AL++   W VTW R   C  +T S  +  GR
Sbjct: 33  NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74


>SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)
          Length = 372

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 498 VYLFGVFLDEIIDSSFSVAFKLLVSRED 415
           VY+F  FLDE +     +A KLLV  E+
Sbjct: 137 VYVFAKFLDERLKRKIQIATKLLVKHEN 164


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
 Frame = +1

Query: 238 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QVLATDYNNYAIAYNCKYDDKKKSHQVF 408
           T ++T+  +      + FK    EIS+ G+V +V+ATD  +  I  + K +  +  HQ  
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187

Query: 409 VWILSRN--KKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 552
           VW ++++  KKL   AK    N +    K + +    H  +   AC+ +S
Sbjct: 188 VWHMAKSVTKKLTEAAKKKDTNDLLPWIKSVSN----HLWWCASACEGSS 233


>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 1170

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 507 FRRVYLFGVFLDEIIDSSFSVAFKLLVSREDPDEHLMRLFLV 382
           F+R+ + GVF +E++ S       ++V  E  DEHL RL +V
Sbjct: 807 FQRL-MQGVFREELLQSMMVYLDDIIVFAESIDEHLRRLEVV 847


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 295 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 426
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 295 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 426
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,036,374
Number of Sequences: 59808
Number of extensions: 434673
Number of successful extensions: 1300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)