Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0641
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    30   0.023
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   2.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = -2

Query: 390 SVHHLFFTKIISFNLHFL*CLISSVPYPLASACFRMIVTQIVHVIPKCLIFGARDIFKV- 214
           +VH LF+   I F +HFL C      Y    A   +I+  + +     +IF    +F + 
Sbjct: 80  TVHLLFYCPFIIFTVHFLLC-----TYYFYYAF--IILLCVYYFYYAFIIFTVHLLFLLC 132

Query: 213 FYVIRS*IFSELHEEFYR*PFINFKGHLQFLTCPYRLF 100
            Y     +F  L   ++   FI F  HL FL C Y  F
Sbjct: 133 IYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYHFF 170


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 625 VENLCFHLYYHSKKIQKLLVFHEYLLRAFAHSSPLSCGCDLQFP 494
           V NL F   Y +KK++++   HE        +     GCDL  P
Sbjct: 12  VLNLFFSQMYFTKKLEQMRQVHE------VDNQLKQMGCDLDIP 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,778
Number of Sequences: 336
Number of extensions: 3484
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)