Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0641
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    29   0.53 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.1  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   4.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   6.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   6.5  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   8.6  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 373 KQMMYRNPLLYEQLVGQYLTDEEIK-ERDRITENASFLNLILETVDHNHMREVKNVQMLE 549
           KQ   RN  +++ L+       +++ E DRI   AS L +    VD      ++ ++ L+
Sbjct: 177 KQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRMEASELKIRYHNVDSLMASTLEEIEKLQ 236

Query: 550 EGIHETPEASEFSLNDST 603
             I  +PE  +  + D++
Sbjct: 237 SSIVHSPEKLKGKIADTS 254


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 469  NASFLNLILETVDHNHMREVKNVQMLEEGIHETPEASEFSLN 594
            NASF++   E  DH     VK++++     H +PE  +  LN
Sbjct: 1169 NASFVSCWSELYDHFQEELVKSIEIALTSPHISPEIIQILLN 1210


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 556  IHETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYIPENRKQRVISAPEKKLLYD 735
            +HET E SE   ND  N     Q         + D+K +  P+ R    +  P+K+++YD
Sbjct: 1276 LHETHEKSE---NDPKNPKAGSQGSGNTS--ASEDSKTEK-PKTRTNNGLQVPDKRVVYD 1329


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 121 EKLQMALEIYKRSPVEFLMQFGK--YLAPNHIKYFENISSSKD 243
           EK     +++    V + M  GK  + APNH++    I  +KD
Sbjct: 224 EKYDAKADLWSVGAVLYEMAVGKPPFKAPNHVELLRRIQKAKD 266


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 49  DYLVRCANISFKNSHANEQPVRTCEKLQMALEI 147
           D+LV    +S  N H  E   RTC++ ++ L I
Sbjct: 86  DFLVDAVFVSESNHHEKEILHRTCKRYRIPLNI 118


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/92 (20%), Positives = 42/92 (45%)
 Frame = +1

Query: 361 YFSEKQMMYRNPLLYEQLVGQYLTDEEIKERDRITENASFLNLILETVDHNHMREVKNVQ 540
           Y+  K   +R    ++  +  YLTD+   E++R+T+       +L++ D  H   +    
Sbjct: 226 YYVMKDPWHRK-CAFDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKSSDKIHSYTLWRTV 284

Query: 541 MLEEGIHETPEASEFSLNDSTNENINFQHKRK 636
             E   H    A+    +++  + + F++K+K
Sbjct: 285 KNEFSSHPAFNATS---SETEQQQLFFEYKQK 313


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 487 LILETVDHNHMREVKNVQM-LEEGIHETPE 573
           +I ET+DH H +E+K+  +  E  ++E  E
Sbjct: 205 IITETLDHAHEQEIKDQSLRFESSLNEANE 234


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 331 PYIFCSLSSCVCLFPNDSHSNSARNS*MFDLWS*RY 224
           P  FC+L  C   F N  H +  ++    + WS +Y
Sbjct: 438 PSNFCALEVCALQFVNGVHKSVVKHLDEKETWSIKY 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,266
Number of Sequences: 5004
Number of extensions: 58587
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)