Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0641
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 33 0.18
04_04_1287 - 32390422-32391588,32392472-32392645 32 0.55
09_04_0288 + 16416409-16416603,16417584-16417635,16417842-164178... 31 0.96
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293... 31 1.3
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 29 3.9
12_02_0914 + 24248993-24249047,24249995-24250122,24250523-242506... 28 9.0
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253... 28 9.0
01_06_1139 + 34835430-34835883,34836377-34836855 28 9.0
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 33.5 bits (73), Expect = 0.18
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 427 LTDEEIK----ERDRITE-NASFLNLILETVDHNHMREVKNVQMLEEGIHETPEASEFSL 591
L D EI+ E R E +A +LE D N ++ K++ L+E I +PE S+
Sbjct: 566 LLDNEIQLLHSEHSRTRELSAHHAKQVLEDQDWNSQQKAKSITELDELIRHSPEQSQ-KT 624
Query: 592 NDSTNENINFQHKRKWGEFTT 654
ND+ E N ++K G T
Sbjct: 625 NDAPLEEDNLHLRQKDGSHGT 645
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 31.9 bits (69), Expect = 0.55
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 1/137 (0%)
Frame = +1
Query: 328 KALQKMKIKTDYFSEKQMMYRNPLLYEQLVGQYLTDEEIKERDRITENASFLNLILETVD 507
+ + +++ KT S ++ +N L+ + YLT+ + + + E +N + E
Sbjct: 69 RKMDELEAKTSVLSIERTELKNKLMDSETTTTYLTNTQKELEAALVEKEGHINQMKENAA 128
Query: 508 HNHMREVKNVQMLEEGIHETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYIPEN 687
+ ++ ++ L + E + L+D + N G T +PEN
Sbjct: 129 ASGPEQMAAIKELLQQKEAELEEIKTKLHDYKKSDTNISESILVGTNNENTTSDTAVPEN 188
Query: 688 RKQRVISAP-EKKLLYD 735
SAP E+ YD
Sbjct: 189 SANPGDSAPAEEHHSYD 205
>09_04_0288 +
16416409-16416603,16417584-16417635,16417842-16417890,
16418354-16418497,16418730-16418783,16418883-16418948,
16419174-16419252,16419390-16419467
Length = 238
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +1
Query: 61 RCANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSK 240
R +++SF+ P+ C + +E++ E Q G + NH KY SSK
Sbjct: 41 RVSSVSFRR-RPPASPLVRCSQDPGKIEVFNTEGTE-QSQGGSTGSINHGKYSTRSFSSK 98
Query: 241 DQTFRNYVHYL 273
D Y HYL
Sbjct: 99 DANITTYNHYL 109
>11_04_0391 +
17127309-17127449,17127886-17127950,17129209-17129305,
17129729-17130193,17130505-17130528
Length = 263
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 505 DHNHMREVKNVQM-LEEGIHETPEA-SEFSLNDSTNENINFQHKRKWG 642
+H+ +E KN +M +++ + E A S S DST +I+F H+R G
Sbjct: 196 EHSSCKEAKNNEMEVDKQVDELASAVSRLSTADSTPSSISFGHRRSRG 243
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 526 VKNVQMLEEGIHETPEASE-FSLNDSTNENINFQHKRKWGEFTT 654
+K + +LE G+ E + FS + ++ N NF+ K K EF+T
Sbjct: 177 LKEIVVLELGLGEVQHSGNAFSTPEPSDVNKNFRRKMKQAEFST 220
>12_02_0914 +
24248993-24249047,24249995-24250122,24250523-24250633,
24250714-24250836,24251183-24251269
Length = 167
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +1
Query: 418 GQYLTDEEIKERDRITENASFLNLILETVDHNHMREVKNVQMLEEGIHETPEASEFSLND 597
G+Y + K R + + S LNL ++ R NV+ E S F+ N+
Sbjct: 90 GRYYDEGLEKTRQTLGDKISQLNLAIDKAASRLKRVAGNVEKEAINDESEIEISSFNDNE 149
Query: 598 STNENINFQ 624
EN+N Q
Sbjct: 150 LVAENLNEQ 158
>06_03_0540 -
21923763-21923945,21924027-21924776,21924895-21925323,
21925509-21925619,21925715-21926040,21926130-21926251,
21926905-21927020,21927119-21927243,21927338-21927596
Length = 806
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +1
Query: 331 ALQKMKIKTDYFSEKQMMYRNPLLYEQLVGQYLTDEEIKERDRITENASFLNLILETVDH 510
A +K+K+ + +E+ ++ L E+L+ Q + DE+ + + +TE L +
Sbjct: 350 AKKKIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFS 409
Query: 511 NHMREV 528
H E+
Sbjct: 410 KHKAEI 415
>01_06_1139 + 34835430-34835883,34836377-34836855
Length = 310
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 121 EKLQMALEIYKRSPVEFLMQFGKYLAPNHIK-YFENISSSKD 243
+++++ +E+Y+R PV FL + + A +K YF+ S KD
Sbjct: 69 QQMELTVEVYRREPV-FLREHLQGTAVIQMKEYFDKFSQGKD 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,484
Number of Sequences: 37544
Number of extensions: 297616
Number of successful extensions: 512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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