Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0641
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)                 89   3e-18
SB_58895| Best HMM Match : SRCR (HMM E-Value=0)                        31   1.3  
SB_35528| Best HMM Match : Planc_extracel (HMM E-Value=9.3)            30   1.7  
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)                    29   4.0  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
          Length = 319

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 11/198 (5%)
 Frame = +1

Query: 49  DYLVRCAN--ISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFE 222
           D  +R  N  ++ K+   +E  + + +K+++  EI K +P  FLM+FG+ L    ++YFE
Sbjct: 17  DMFLRIVNSGVTIKSQQRDEPDLSSEQKIKILEEIKKTNPASFLMRFGQSLVTKDLEYFE 76

Query: 223 NISSSKDQTFRNY-----VHYLSDYHSETSXXXXXXXXXYKALQKMKIKTDYFSEKQMMY 387
           ++   K  T  NY     +  +  +  +           Y+A+Q++   + +FSE++M  
Sbjct: 77  SLY--KQNTLTNYEIGFRLKEIKKHLDQQKHHVEVQNRRYEAMQRLINDSTFFSEEEMRK 134

Query: 388 RNPLLYEQLVGQYLTDEEIKERDRITE---NASFLNLILETVDHNHMREVKNVQMLEE-G 555
           RNPLLYEQ +GQYLT+EE  ERD I E     S   L+    D    + + N Q  +E  
Sbjct: 135 RNPLLYEQYIGQYLTEEEKLERD-IAEREGEPSLSQLMFSKYDAEKTQWIYNYQREQERE 193

Query: 556 IHETPEASEFSLNDSTNE 609
           + E  E SE  + + + +
Sbjct: 194 MEEEEEDSEEEMEEDSQD 211


>SB_58895| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1838

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +1

Query: 406 EQLVGQYLTDEEIKERDRITENASFLNLILETVDHNH-MRE--VKNVQMLEEGIHETPEA 576
           + +  Q +T+E +  +  +TE A    LI E    N  M E  +KN QM EE  ++    
Sbjct: 158 QPMTNQPMTEESMTNQP-MTEEAMTSQLITEEAMTNQPMTEEAMKNEQMTEEATNQPMTG 216

Query: 577 SEFSLNDSTNENINFQHKRKWGEFTTPDT 663
              ++   T E +  QH  K      P T
Sbjct: 217 EAMTIQPMTGEAMTNQHMTKEAMKNQPTT 245


>SB_35528| Best HMM Match : Planc_extracel (HMM E-Value=9.3)
          Length = 92

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 628 KRKWGEFTTPDTKPDYIPENRKQRVISAPEKKLLY 732
           KRKWG    P   PD++   R+QR     E  L++
Sbjct: 28  KRKWGFARDPRANPDFLLRGRRQRRFQTFESVLVW 62


>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 562  ETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYIPENRKQRVISAPEKKLLYDE 738
            E+ E +  S  +  N        R+      PD +PD    +R   ++SA EKK+++D+
Sbjct: 1013 ESEEDNWISDAEDDNNEDGVMKDRRTESKRAPD-RPDSASRSRTDSIVSAEEKKMMFDK 1070


>SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)
          Length = 638

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 628 KRKWGEFTTPDTKPDYIPENRKQR 699
           KRKWG    P   PD++   R+QR
Sbjct: 28  KRKWGFARDPRANPDFLLRGRRQR 51


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 489 NIGNCRSQPHERGEECANARRRYS 560
           +I  C+S P + G  CAN   +YS
Sbjct: 507 DINECQSNPCKNGGTCANGEHKYS 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,273,372
Number of Sequences: 59808
Number of extensions: 380219
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)