Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0641
         (742 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119623-1|AAM50277.1|  364|Drosophila melanogaster LD46912p pro...    86   4e-17
AE014134-1457|AAF52638.1|  364|Drosophila melanogaster CG7810-PA...    86   4e-17
EF428975-1|ABO20847.1| 2381|Drosophila melanogaster Kon-tiki pro...    30   3.8  
AY051797-1|AAK93221.1|  514|Drosophila melanogaster LD31354p pro...    30   3.8  
AE014134-2938|AAF53672.2| 2355|Drosophila melanogaster CG10275-P...    30   3.8  
AE013599-1841|AAF58281.4| 4012|Drosophila melanogaster CG30069-P...    29   6.6  
AE013599-3045|AAF57444.1| 1469|Drosophila melanogaster CG16742-P...    29   8.8  

>AY119623-1|AAM50277.1|  364|Drosophila melanogaster LD46912p
           protein.
          Length = 364

 Score = 86.2 bits (204), Expect = 4e-17
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
 Frame = +1

Query: 34  VTDIIDYLVRCANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIK 213
           + DI   L     I FK+   ++  +   EK Q+A + + ++   FL++FG +L    + 
Sbjct: 29  IIDIFKSLAENNQIVFKSQQIDDPEIPVEEKQQIARDAFDKNRENFLIRFGGFLNVRQLG 88

Query: 214 YFENISSSK----DQTFRNYVHYLSDYHSE-TSXXXXXXXXXYKALQKMKIKTDYFSEKQ 378
            F+ ++  +    D+        L D+  +  +         Y A+Q++  K +YFSE +
Sbjct: 89  SFQELAVKEPIKADENLEEMCLLLEDFRRKLNTRAVSIKNRRYHAMQQLLDKGEYFSEHE 148

Query: 379 MMYRNPLLYEQLVGQYLTDEEIKERDRI-TENASFLNLILETVDHNHMREVKNVQMLEEG 555
           MM R P LY++LVGQYLT+ E K RD     N SF  +++ T++     E+   +  +EG
Sbjct: 149 MMQRAPDLYQELVGQYLTEAEKKARDSYDVRNTSFSGILMHTLEKKQRDELLE-ETQQEG 207

Query: 556 IHETPEASEFSLNDSTNENINFQHKRKWGEF 648
                  SE   N   + ++    +++WG F
Sbjct: 208 KQSVQVTSE--SNPQADCDVPVACRKQWGGF 236


>AE014134-1457|AAF52638.1|  364|Drosophila melanogaster CG7810-PA
           protein.
          Length = 364

 Score = 86.2 bits (204), Expect = 4e-17
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
 Frame = +1

Query: 34  VTDIIDYLVRCANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIK 213
           + DI   L     I FK+   ++  +   EK Q+A + + ++   FL++FG +L    + 
Sbjct: 29  IIDIFKSLAENNQIVFKSQQIDDPEIPVEEKQQIARDAFDKNRENFLIRFGGFLNVRQLG 88

Query: 214 YFENISSSK----DQTFRNYVHYLSDYHSE-TSXXXXXXXXXYKALQKMKIKTDYFSEKQ 378
            F+ ++  +    D+        L D+  +  +         Y A+Q++  K +YFSE +
Sbjct: 89  SFQELAVKEPIKADENLEEMCLLLEDFRRKLNTRAVSIKNRRYHAMQQLLDKGEYFSEHE 148

Query: 379 MMYRNPLLYEQLVGQYLTDEEIKERDRI-TENASFLNLILETVDHNHMREVKNVQMLEEG 555
           MM R P LY++LVGQYLT+ E K RD     N SF  +++ T++     E+   +  +EG
Sbjct: 149 MMQRAPDLYQELVGQYLTEAEKKARDSYDVRNTSFSGILMHTLEKKQRDELLE-ETQQEG 207

Query: 556 IHETPEASEFSLNDSTNENINFQHKRKWGEF 648
                  SE   N   + ++    +++WG F
Sbjct: 208 KQSVQVTSE--SNPQADCDVPVACRKQWGGF 236


>EF428975-1|ABO20847.1| 2381|Drosophila melanogaster Kon-tiki protein.
          Length = 2381

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +1

Query: 394  PLLYEQLVGQYL----TDEEIKERDRITENASFLNLILETVDHNHMREVKNVQMLEEGIH 561
            PL  +Q++  YL    +DEE + R  IT   S   ++ E +D+   +EV           
Sbjct: 1608 PLTKKQILRDYLHFKCSDEEREIRYNITVPPSLGRIVNEFIDNGFTKEV----------- 1656

Query: 562  ETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYIPENRKQRVIS 708
                 SEF+ ND  N +I ++H     EF T D+    +   R  R+++
Sbjct: 1657 -----SEFTQNDVDNGHIFYEHTAVIMEFRTNDSFYFDVVAERSDRLLN 1700


>AY051797-1|AAK93221.1|  514|Drosophila melanogaster LD31354p
           protein.
          Length = 514

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +1

Query: 394 PLLYEQLVGQYL----TDEEIKERDRITENASFLNLILETVDHNHMREVKNVQMLEEGIH 561
           PL  +Q++  YL    +DEE + R  IT   S   ++ E +D+   +EV           
Sbjct: 48  PLTKKQILRDYLHFKCSDEEREIRYNITVPPSLGRIVNEFIDNGFTKEV----------- 96

Query: 562 ETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYIPENRKQRVIS 708
                SEF+ ND  N +I ++H     EF T D+    +   R  R+++
Sbjct: 97  -----SEFTQNDVDNGHIFYEHTAVIMEFRTNDSFYFDVVAERSDRLLN 140


>AE014134-2938|AAF53672.2| 2355|Drosophila melanogaster CG10275-PA
            protein.
          Length = 2355

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +1

Query: 394  PLLYEQLVGQYL----TDEEIKERDRITENASFLNLILETVDHNHMREVKNVQMLEEGIH 561
            PL  +Q++  YL    +DEE + R  IT   S   ++ E +D+   +EV           
Sbjct: 1582 PLTKKQILRDYLHFKCSDEEREIRYNITVPPSLGRIVNEFIDNGFTKEV----------- 1630

Query: 562  ETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYIPENRKQRVIS 708
                 SEF+ ND  N +I ++H     EF T D+    +   R  R+++
Sbjct: 1631 -----SEFTQNDVDNGHIFYEHTAVIMEFRTNDSFYFDVVAERSDRLLN 1674


>AE013599-1841|AAF58281.4| 4012|Drosophila melanogaster CG30069-PA
           protein.
          Length = 4012

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 499 TVDHNHMREVKNVQMLEEGIHETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYI 678
           TV   +++   N++   EG   +PE  ++   D  ++  +  + +  GEF TP+ KP Y 
Sbjct: 733 TVRPGYVKPTDNLK--PEGEFYSPEKPKYQPGDRPSQVRHQDNLKPEGEFYTPE-KPGYA 789

Query: 679 PENR 690
           P +R
Sbjct: 790 PADR 793


>AE013599-3045|AAF57444.1| 1469|Drosophila melanogaster CG16742-PA,
           isoform A protein.
          Length = 1469

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 562 ETPEASEFSL-NDSTNENINFQHKRKWGEFTTPDTKPDYIPENRKQRVISAPEKK 723
           ETP AS+ SL +D  +E++    K K    + PD  P+ + E++KQ  I+  + K
Sbjct: 586 ETPVASKKSLFDDIEDEDLFGTPKAKNLIRSEPDNDPEAVGEDKKQSEIAEQKSK 640


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,265,243
Number of Sequences: 53049
Number of extensions: 560355
Number of successful extensions: 1249
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)