Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0641
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.0  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   7.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 46  IDYLVRCANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLM 177
           ++ +V C +IS+ +  A   P  + EK+ + + I     + FL+
Sbjct: 240 VNLIVPCVSISYLSVLAFYLPADSGEKIALCINILLSQTMFFLL 283


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 343 MKIKTDYFSEKQMMYRNPLLYEQLVGQYLTDEEIKER 453
           + I  D   +K+  + + L+     G  LTD+E+KE+
Sbjct: 305 LDIDDDVGEKKRQAFLDLLIEAGQNGVLLTDKEVKEQ 341


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 107 GCSLAWEFLKDIF 69
           GC +AW+F K I+
Sbjct: 124 GCEVAWQFGKCIY 136


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 107 GCSLAWEFLKDIF 69
           GC +AW+F K I+
Sbjct: 98  GCEVAWQFGKCIY 110


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 414 QLFI*KRISVHHLFFTKIISFNL 346
           QLF  + + V++ FFT+  S NL
Sbjct: 465 QLFADRGMKVYYYFFTQRTSTNL 487


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 46  IDYLVRCANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLM 177
           ++ ++ C  ISF +      P  + EK+ +++ I     V FL+
Sbjct: 241 VNLIIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLL 284


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 623 NTKENGVNSLPQIRNLTIFQKTENR 697
           N +   VNSL  + NL     TENR
Sbjct: 158 NVQALPVNSLCSLDNLQTLNLTENR 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,570
Number of Sequences: 438
Number of extensions: 3730
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)