Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0641
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47090.1 68418.m05806 expressed protein                             35   0.065
At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative (CH...    32   0.46 
At5g07820.1 68418.m00896 expressed protein                             29   3.2  
At3g52110.1 68416.m05719 expressed protein                             29   3.2  
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast...    29   4.3  
At2g26820.1 68415.m03218 avirulence-responsive family protein / ...    28   5.7  
At2g20980.1 68415.m02483 expressed protein                             28   5.7  
At1g62530.1 68414.m07055 hypothetical protein                          27   9.9  

>At5g47090.1 68418.m05806 expressed protein
          Length = 310

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +1

Query: 121 EKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSK--DQTFRNYVHYLSDYHSET 294
           ++  + L++ +R P  FL ++G  L  + +  F+ +      D   +N    +S    E 
Sbjct: 48  QRKSILLDLLRRDPAVFLERYGSELLVDELLEFDAMKHDYEVDWHLKNLRKKISPTSEEI 107

Query: 295 SXXXXXXXXXYKA-LQKMKIKTDYFSEKQMMYRNPLLYEQLVGQY 426
                       A L K+  +  YFSE  M  R P L+ + VG++
Sbjct: 108 KSRSVAVRNRRLAYLNKLVSEGQYFSEDAMRDREPYLHHEYVGKF 152


>At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative
           (CHX25) similar to Na+/H+-exchanging protein slr1595,
           Synechocystis sp., PIR:S74951; monovalent cation:proton
           antiporter family 2 (CPA2) member, PMID:11500563
          Length = 857

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 373 KQMMYRNPLLYEQLVGQYLTDEEIKERDRITENASFLNL-ILETVDHNHMREVKNVQMLE 549
           +Q MYR  +L+   +G     E +   DR+TEN  F+NL ++  + HNH  E +  + L+
Sbjct: 679 RQEMYRFVVLF---LGGADNREALHLADRMTEN-PFINLTVIRFLAHNHEGEDEREKKLD 734

Query: 550 EGI 558
           +G+
Sbjct: 735 DGV 737


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = +1

Query: 430 TDEEIKERDRITENASFLNLILETVDHNHMRE-VKNVQMLEEGIHETPEASEFSLNDSTN 606
           TD E+K+  RI+EN S     L+  +   + E V+   +LE+   +  + S  S N ++ 
Sbjct: 222 TDLEVKKVSRISENKSSKEDTLKNKEKAKIDEPVRCDDVLEKTSLDAQKVSRISENKNSK 281

Query: 607 ENINFQHKRKWGEFTTPDTKPDYIPENRKQRVISAPEKK 723
           E      K K         +PD   E     V S+ EKK
Sbjct: 282 EERLKNLKNKEKTNIDEPVRPDDAVEKTLYVVESSVEKK 320


>At3g52110.1 68416.m05719 expressed protein 
          Length = 362

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 550 EGIHETPEASEFSLNDSTNENINFQHKRKWGEFTTPDTKPDYIPENRKQRVISAP 714
           E    TP +S+      TNE +  Q++R+ G   +P T  +   EN+   + + P
Sbjct: 59  EDFFSTPTSSKHPSLRDTNETLTEQNQRRRGYALSPSTPNNQESENQNPNLATPP 113


>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
           plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159284]
          Length = 567

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 163 VEFLMQFGKYLAPNHIKYFENISSSKD 243
           V+ L  FG  L P  +KY +NI + KD
Sbjct: 190 VDILTGFGAVLGPQKVKYGDNIITGKD 216


>At2g26820.1 68415.m03218 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains
           Pfam profile PF04548: AIG1 family
          Length = 463

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +1

Query: 346 KIKTDYFSEKQMMYRNPLLYEQLVGQYLTDEEIKERDRITENASFLNLILETVDHNHMRE 525
           +++ +   EK+ +       +QL+ Q   +E++ E++R  +N +   L    V+   M E
Sbjct: 237 EMQQNLLMEKEKLQMEEAKNKQLIAQAEANEKLMEQER-AKNRAETELAAVMVEKLQMEE 295

Query: 526 VKNVQMLEE 552
            KN Q++ +
Sbjct: 296 EKNKQLIAQ 304


>At2g20980.1 68415.m02483 expressed protein
          Length = 396

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 424 YLTDEEIKERDRITENASFLNLILETVDHNHMREVKNVQMLEEGIHETPEASEFS 588
           YLTD+E  +R   ++ + F +++ + +D+N     KN +        T +  +FS
Sbjct: 32  YLTDDESPKRRGHSDLSDFRSVVQDCIDYNPKPIAKNTKPKGSNNSNTNDIEKFS 86


>At1g62530.1 68414.m07055 hypothetical protein
          Length = 282

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 55  LVRCANISFKNSHANEQPVRTCEKLQM-ALEIYKRSPVE 168
           LV  + +S   SH  ++P R+C+  ++  LEI +  P E
Sbjct: 149 LVHISAVSHNQSHGVQEPGRSCDSFELHTLEIRETVPEE 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,818
Number of Sequences: 28952
Number of extensions: 275010
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)