Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0640
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   203   2e-53
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   203   2e-53
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.72 
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    29   0.72 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.95 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    28   1.7  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   6.7  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   6.7  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.9  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  203 bits (496), Expect = 2e-53
 Identities = 92/158 (58%), Positives = 121/158 (76%)
 Frame = -1

Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
            R+RK   A+R GRH G+GKR+GTA ARMP   +W              R + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  203 bits (496), Expect = 2e-53
 Identities = 92/158 (58%), Positives = 121/158 (76%)
 Frame = -1

Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
            R+RK   A+R GRH G+GKR+GTA ARMP   +W              R + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 489 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 578
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 714 IHCRDNTGFPRCEPKTQPSCRIRHEGQDEFPQAAEEACSLCY 589
           I C    G P+  PK+QP   IRH   DE  +   E  S C+
Sbjct: 118 ISCHSMHG-PKVNPKSQPLVIIRHRASDEHFEIVNEILS-CF 157


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 510 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 605
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 454 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 356
           ++V  K  K  E+++  AL RE V+P R  H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 644 TRVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 504
           T ++ S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 312 THLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 594 RGCKPLLQLEGTHPDPRAEF 653
           + CKPL    G HPDP   +
Sbjct: 239 QNCKPLPDFGGGHPDPNLTY 258


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 193 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 285
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  FVFSSEGLQQFLLLGGNTFLAALACLLHFIAA 149
           +V   E   +FLLLG   F  A + LLH +++
Sbjct: 50  YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,623
Number of Sequences: 5004
Number of extensions: 63588
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)