Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0640
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 222 3e-58
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 221 6e-58
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 33 0.19
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 33 0.19
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.25
10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069 31 0.75
03_02_0050 + 5272471-5274861 31 1.3
04_03_0266 + 13648287-13649099,13649186-13649524 30 1.7
06_01_0589 + 4235361-4235433,4236484-4237187,4237584-4237805,423... 30 2.3
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 30 2.3
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 4.0
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 5.3
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 9.3
09_06_0281 + 22014394-22015534,22016041-22017056 28 9.3
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 28 9.3
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 9.3
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 9.3
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 222 bits (542), Expect = 3e-58
Identities = 103/158 (65%), Positives = 122/158 (77%)
Frame = -1
Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
+R R+ EA++KGRH G+GKRRGT AR+P K LW R AKKID+H+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
H +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 221 bits (539), Expect = 6e-58
Identities = 102/158 (64%), Positives = 122/158 (77%)
Frame = -1
Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
+R R+ EA++KGRH G+GKRRGT AR+P K LW R AKKID+H+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
H +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -1
Query: 617 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 447
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 446 VRKNTEARRKGRHCGFG 396
+ T RKGR GFG
Sbjct: 806 DEETTSISRKGRAQGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -1
Query: 617 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 447
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 446 VRKNTEARRKGRHCGFG 396
+ T RKGR GFG
Sbjct: 757 DEETTSISRKGRAQGFG 773
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 260 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069
Length = 117
Score = 31.5 bits (68), Expect = 0.75
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 553 FGSNHTFFLPHRITEAASLFCSLRELILTLVPNSARGLRFRFAA 684
FG N TF LP R+ SL + +L L P+SA GLR R AA
Sbjct: 31 FG-NFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRPAA 73
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 87 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 245
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = -1
Query: 674 RKRNPRAEFGTRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIK 495
R++ + G ++R + A C K+K+ L +E ++ T R+ RK+ K
Sbjct: 289 RRQTGQGSGGPKIRSEAQPNTSNPAGQSDSC-KRKLVLSDDEGDDAEKTRDRETTRKLPK 347
Query: 494 DGLVIKKPVAVHSRARVRKNT 432
+ KK + H ++RK++
Sbjct: 348 QA-IPKKKTSSHPMPKIRKSS 367
>06_01_0589 +
4235361-4235433,4236484-4237187,4237584-4237805,
4237900-4238559
Length = 552
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 597 GCKPLLQLEGTHPDPRAEFGTRVAFSVRSGENRYYLDNE*NGVLFSFSRLC 749
GC+P+LQ+ G P + T+V FS + L + + + F+ C
Sbjct: 221 GCRPILQIYGPDPFAPNDKSTKVLFSTPKTSDSVQLYTQEDSEIIKFNARC 271
>03_02_0983 - 12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = -1
Query: 695 PVFPAANRKRNPRAEFGTRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQ 516
P A+++ NPR + GTRVR + + + +A ++ GK+K DP ++ RQ
Sbjct: 850 PDLQASSQAMNPRRQ-GTRVRPPTARALEAVAFGLLGSGKRKA--DPT-----GSSRPRQ 901
Query: 515 NIRKMIKD 492
RK K+
Sbjct: 902 RARKSTKE 909
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 548 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 375
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 491 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 378
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 563 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 459
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 462 YCYRFLDDETILDHLTDVLSGVGVCDLID 548
Y YR DDE+++ H T +L+ + D++D
Sbjct: 657 YSYRSPDDESLVTHFTALLTQGNLGDILD 685
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -1
Query: 641 RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 474
RVR L K V R LDP +NE N R N+ IKD L ++
Sbjct: 531 RVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCLFARQ 586
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 497 KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 369
KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -1
Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 452 ARVRKNTEARRK 417
NT RK
Sbjct: 162 IENSPNTVTVRK 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,981,383
Number of Sequences: 37544
Number of extensions: 461289
Number of successful extensions: 1346
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -