Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0640
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              252   2e-67
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    30   1.8  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   4.1  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)                     29   5.4  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   7.2  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   7.2  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  252 bits (617), Expect = 2e-67
 Identities = 121/198 (61%), Positives = 144/198 (72%)
 Frame = -1

Query: 641 RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 462
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 461 HSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDR 282
           HSRARVRK  EAR KGRH G GKR+GTANARMPQK +W              R AKKID 
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDN 145

Query: 281 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXX 102
           H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ                   
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRM 205

Query: 101 XXXXXELLQTFAREDEAA 48
                ++L  +A+E+EAA
Sbjct: 206 EQKRKDMLSAYAKEEEAA 223


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 360 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 527
           L++TR+ C SSL    VT  S  + V      G+Y  R   D  +   L  VL G+
Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 163


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +3

Query: 534  CDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDPRAEFGTRVAFSVRSGENRYYLDNE 713
            C  ID+    P     +   R  + L QLE  +  P AEF + V  SV   E++ YL NE
Sbjct: 3145 CTAIDWFHEWPQEALVSVSRRFIEDLEQLEAEYKPPVAEFMSYVHTSVNE-ESQMYLANE 3203


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 326 LKPFVFVPIVPSVAY--AHWLYLFSYQSHSDDPFYVLLCFCGH 448
           +K + F+P    V +    W +  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 326 LKPFVFVPIVPSVAY--AHWLYLFSYQSHSDDPFYVLLCFCGH 448
           +K + F+P    V +    W +  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 455 RARVRKNTEARRKGRHCGFGKRRGTANAR 369
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
          Length = 177

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 360 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 527
           L++TR+ C S L  A VT  S  + V      G+Y  R   D  +   +  VL G+
Sbjct: 68  LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLYNTRVTCDSRMYLVILTVLPGL 123


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 84  FLLLGGNTFLAALAC 128
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 100 PPRRRNCCRPSLEKTKPRLPLRSK 29
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,957,052
Number of Sequences: 59808
Number of extensions: 514849
Number of successful extensions: 1527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)