Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0640
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   214   7e-56
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF068716-1|AAC17747.1|  247|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  214 bits (522), Expect = 7e-56
 Identities = 96/158 (60%), Positives = 123/158 (77%)
 Frame = -1

Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
            R R+  EARRKGRH G+GKRRGTANARMP+K LW              R AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
           H LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 536  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 402
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 290 SSWQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLCFC 442
           S + + T  +  LKP++   IV +++Y   L+LF+  +     F  +L FC
Sbjct: 93  SYFSYSTHSSTSLKPYIAHHIVMAISYCFCLFLFAMFAWKQHFFVEILSFC 143


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 133 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 29
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical
           protein M199.3 protein.
          Length = 647

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
 Frame = +2

Query: 263 RVSG--IDACQSSWQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLC 436
           RV G   +ACQS+    T   +    F F+  + +VAY  W      +  SDD   V+  
Sbjct: 555 RVDGKRTEACQSTPD--TPNCMSQSGFTFINPMSTVAYPKWASSIGARDGSDDDCIVIKT 612

Query: 437 FCGHERGSVLLQVS**RDHP*SSYGC--SVWSWCL 535
             G +  + +   +     P  +Y C    W W L
Sbjct: 613 VSGKKSVATVQSCTTMTSLPAQAYMCGREAWVWNL 647


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 86  PPSWRQYVPRGACVPP 133
           P SW QY P+G C+ P
Sbjct: 221 PNSWHQYQPKGTCIQP 236


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 296 WQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSD-DPFYVLLCFCGHER 454
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 524 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 411
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 417 LSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFI 554
           ++T FC+FAD S   +  R  DD+  ++   +  SG  + D+I F+
Sbjct: 435 VNTIFCLFADASPAKWT-RLQDDDVAIEEEKEEYSG-SIEDIIKFL 478


>AF068716-1|AAC17747.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D11.4 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 528 GVCDLIDFIWIQPHLLFTTSHNRGC-KPLLQLEGTHPDPRAEFGTRVAFSVRSG-ENRYY 701
           G+C L   + + P++L +   NR C +P++Q      D + + GT  AF +  G  N  Y
Sbjct: 103 GICMLHKNLDLHPYVLLSGHRNRECNQPIIQFASL--DKKCKNGT-TAFEIADGSSNHSY 159

Query: 702 LDN 710
           L +
Sbjct: 160 LQS 162


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 112 RNVLPPRRRNCCRPSLEKTKPRLP 41
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,399,536
Number of Sequences: 27780
Number of extensions: 378573
Number of successful extensions: 1201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)