Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0640
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 215 2e-56
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 214 5e-56
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 213 1e-55
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 4e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 4.4
At2g39980.1 68415.m04913 transferase family protein contains Pfa... 28 5.9
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 5.9
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 7.7
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 7.7
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 7.7
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 215 bits (526), Expect = 2e-56
Identities = 100/158 (63%), Positives = 119/158 (75%)
Frame = -1
Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
+R R EA+RKGRH G+GKR+GT AR+P K LW R +KKIDRH+Y
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120
Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
H +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 214 bits (523), Expect = 5e-56
Identities = 99/158 (62%), Positives = 120/158 (75%)
Frame = -1
Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
+R R+ A+RKGRH G+GKR+GT AR+P K LW R KKIDRH+Y
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120
Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
H +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 213 bits (519), Expect = 1e-55
Identities = 99/158 (62%), Positives = 118/158 (74%)
Frame = -1
Query: 632 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 453
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 452 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 273
+R RK A+ KGRH G+GKR+GT AR+P K LW R KKID+H+Y
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 272 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 159
H +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = -1
Query: 296 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 186
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +1
Query: 160 WSLSIFVLAFSAFFLWMYSMSTRL 231
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At2g39980.1 68415.m04913 transferase family protein contains Pfam
profile PF02458 transferase family
Length = 482
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 501 HLTDVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDPRAEFGTRVAFSVR 680
H++DV++G+ V D++ + + HNR P+L ++ T + G V +V
Sbjct: 108 HVSDVIAGIDVPDVVKEFFTYDRAVSYEGHNR---PILAVQVTELNDGVFIGCSVNHAVT 164
Query: 681 SGENRYYLDN 710
G + + N
Sbjct: 165 DGTSLWNFIN 174
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 494 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 375
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 472 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 567
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 556 GSNHTFFLPHRITEAASLFCSLRELI 633
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 141 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 257
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,513
Number of Sequences: 28952
Number of extensions: 355319
Number of successful extensions: 955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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