Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0639
         (604 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P91364 Cluster: Putative uncharacterized protein; n=2; ...    34   3.0  
UniRef50_Q8ILX0 Cluster: Putative uncharacterized protein; n=2; ...    33   5.2  
UniRef50_Q7VGA9 Cluster: Putative uncharacterized protein; n=1; ...    32   9.1  

>UniRef50_P91364 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 516

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 600 FIQIDENVPFLLNKTHSRLNKLTNIDRKNVKF 505
           F +  ++  F+LN    RL + TN DRKNV+F
Sbjct: 56  FFRYQDDYLFILNNLPDRLQETTNFDRKNVRF 87


>UniRef50_Q8ILX0 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 3218

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 515  MLNSVCKFFNNIIQNC*LKVYLHSSYMFNCSIQCDKDLNNKAFKLPIAKNYLCAFNM 345
            + N + +++NN         YL+  Y  + +I CD   N   + +PI+K+  C  N+
Sbjct: 2880 LFNLILRYYNNF--------YLYKKYYISSTISCDLKYNQNWYYIPISKDIYCKKNI 2928


>UniRef50_Q7VGA9 Cluster: Putative uncharacterized protein; n=1;
            Helicobacter hepaticus|Rep: Putative uncharacterized
            protein - Helicobacter hepaticus
          Length = 954

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 357  TQVIFCDRQFKSFIIKILIALYTTIKHIATM*IYF*LAVLYYIIEKLTDRI*HF-----F 521
            TQ     + +K  I  IL   Y+ I  +  + ++F +A  +Y+   L D I H       
Sbjct: 804  TQDYMFKKDYKHIISAILYVNYSLIFALGLIVLFFGVAYGFYVYHFLGDLI-HIPDSTIN 862

Query: 522  YQYWLIYSTWNVSYSIKMV 578
            + +WLI+   N +YS+ +V
Sbjct: 863  WDFWLIFPLQNYAYSVTLV 881


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,988,784
Number of Sequences: 1657284
Number of extensions: 7023842
Number of successful extensions: 17834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17784
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)