Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0639
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.5  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   2.6  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   8.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 457 YIYIVAICLIVVYSAIRILIIKLLNCLSQKITCVPL 350
           Y +I+ +C+   Y A  I  + LL  L      VPL
Sbjct: 105 YAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPL 140



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 17/86 (19%), Positives = 39/86 (45%)
 Frame = +3

Query: 321 YYV*SILFHIKGTQVIFCDRQFKSFIIKILIALYTTIKHIATM*IYF*LAVLYYIIEKLT 500
           +Y   I+F +    ++     F +FII  +  L+        M + F L + Y+ +  L 
Sbjct: 149 FYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHLLFLLCLDYFTLHLLF 208

Query: 501 DRI*HFFYQYWLIYSTWNVSYSIKMV 578
               ++FY  ++I++   + Y + ++
Sbjct: 209 LPCIYYFYSAFIIFTIHLLFYCVLII 234


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 74  LNTNSTKNNHYTYSVNYY 127
           L+TN T   HYTY +  Y
Sbjct: 141 LSTNPTPPPHYTYQIIPY 158


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 403 LIIKLLNCLSQKITCVP 353
           L++  +NCL +K  C P
Sbjct: 52  LLLNYINCLLEKGPCSP 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,688
Number of Sequences: 336
Number of extensions: 2292
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)