Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0639
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   6.7  
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 651

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 264 CTCNTDDLIIPFNKCHADIDPC 199
           CTCN+  ++IP N+   D D C
Sbjct: 210 CTCNSGFILIPDNRTCNDTDEC 231


>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -1

Query: 451 YIVAICLIVVYSAIRILIIKLLNC--LSQKITCVPLI 347
           Y+V+ CLIV+ S  R+++I  ++C  L   ++C+ +I
Sbjct: 167 YVVS-CLIVIISVSRLIMIMSVSCLILIMSVSCIIVI 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,155
Number of Sequences: 59808
Number of extensions: 216317
Number of successful extensions: 479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)