Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0639
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical pr...    34   0.090
Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical
           protein K06A9.2 protein.
          Length = 516

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 600 FIQIDENVPFLLNKTHSRLNKLTNIDRKNVKF 505
           F +  ++  F+LN    RL + TN DRKNV+F
Sbjct: 56  FFRYQDDYLFILNNLPDRLQETTNFDRKNVRF 87


>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 497 YRPNLTFFLSILVNLFNLECVLFNKNGTFSSICINK 604
           YR NL   L   +N FNL    FN N TF    ++K
Sbjct: 116 YR-NLVTLLKYKINTFNLSYWFFNNNPTFRDTELSK 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,075,625
Number of Sequences: 27780
Number of extensions: 183052
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)