Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0639
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.3  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   7.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.3  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 53  HVFNIFFLNTNSTKNNHYTYSVNY 124
           ++ NI   N N+  N    Y++NY
Sbjct: 89  YISNISNYNNNNNYNKKLYYNINY 112


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 53  HVFNIFFLNTNSTKNNHYTYSVNY 124
           ++ NI   N N+  N    Y++NY
Sbjct: 327 YISNISNYNNNNNYNKKLYYNINY 350


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 231 FNKCHADIDP 202
           FNKC+A++ P
Sbjct: 130 FNKCYAELSP 139


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 62  NIFFLNTNSTKNNHYTYSVNYYY 130
           N  + N N+  NN+  Y+   YY
Sbjct: 88  NYNYSNYNNYNNNYNNYNKKLYY 110


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 62  NIFFLNTNSTKNN 100
           N+ +L TN+T NN
Sbjct: 722 NVSYLTTNNTSNN 734


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 74  LNTNSTKNNHYTYSVN 121
           L+ N+  NN+Y Y+ N
Sbjct: 84  LSNNTIHNNNYKYNYN 99


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 74  LNTNSTKNNHYTYSVN 121
           L+ N+  NN+Y Y+ N
Sbjct: 84  LSNNTIHNNNYKYNYN 99


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 74  LNTNSTKNNHYTYSVN 121
           L+ N+  NN+Y Y+ N
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 74  LNTNSTKNNHYTYSVN 121
           L+ N+  NN+Y Y+ N
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 74  LNTNSTKNNHYTYSVN 121
           L+ N+  NN+Y Y+ N
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 74  LNTNSTKNNHYTYSVN 121
           L+ N+  NN+Y Y+ N
Sbjct: 85  LSNNTIHNNNYKYNYN 100


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 77  NTNSTKNNHYTYSVNYYYVDN 139
           N N+  NN+Y  + N Y  +N
Sbjct: 325 NNNNYNNNNYNNNYNNYNNNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,905
Number of Sequences: 438
Number of extensions: 2589
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)