Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0638
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   1.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   2.6  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   7.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   7.8  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 239  RNFQKTKITMINGCFFFSRWQLASC--DASVEI 331
            RN ++ + +++NGCF  + +  AS   D SVE+
Sbjct: 1267 RNGERNRFSVVNGCFLGNTYAFASVTQDGSVEV 1299


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 516 DTKRLIIHNYKFNPEEIYNY 575
           D KR+I+H+   NPE + NY
Sbjct: 632 DIKRVIVHSNLLNPEWLMNY 651


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 233 SSRNFQKTKITMINGCFFFSRWQLAS 310
           SS  FQ T     NG FF   W+L S
Sbjct: 17  SSVRFQSTSSGSSNGNFFLRHWKLLS 42


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 591 NLTSLIGFPLKSRQRCTNYITLFNIT 668
           N T+++G  L+ RQ C + + L N+T
Sbjct: 802 NYTTILGLLLRLRQACCDPVLLSNMT 827


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 501 FCTFIDTKRLIIHNYKFNPEEIYNYQNKTNNLTSLIGFPLKS 626
           F T  DT  L +H++   P  I NYQ   +N  S I    +S
Sbjct: 571 FSTSYDTD-LGMHSFMIKPGGIVNYQACVSNYRSFINVTARS 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,960
Number of Sequences: 5004
Number of extensions: 54524
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)