Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0638
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0604 + 4497210-4497569,4497637-4497822,4498218-4498573,449...    29   2.6  
11_06_0284 + 21909758-21913645                                         29   4.6  
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573...    28   6.1  
07_03_1313 - 25708027-25708099,25708633-25708704,25710012-257100...    28   8.0  

>02_01_0604 +
           4497210-4497569,4497637-4497822,4498218-4498573,
           4499042-4499122,4499451-4499610,4499855-4499920
          Length = 402

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 538 WIIKRLVSMNVQKYLWEKRNKVAGCGFFLFFSGPPQFSR 422
           WI+K L++     Y     ++ AG GFFLF S PP+  R
Sbjct: 18  WIVKLLLARG---YAVRGTSRRAGMGFFLFDSPPPRRRR 53


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 124 DDDHDRSDKSENTYEKKYD 180
           DDD+D  D  +N  EKKYD
Sbjct: 520 DDDYDDDDYDDNEEEKKYD 538


>10_08_0165 +
           15356748-15356811,15357113-15357186,15357311-15357394,
           15357508-15357602,15357737-15357790,15357791-15357896,
           15358236-15358277,15358585-15358674,15358788-15358984,
           15359355-15359413,15360166-15362252
          Length = 983

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +2

Query: 236 SRNFQKTKITMINGCFFFSRWQLASCDASVEITSFQLLLLH 358
           +RN+  T  TMIN    FS  Q  SC     I+S +L+LLH
Sbjct: 245 NRNWSMTVETMIN----FSCVQFLSCSLRAFISSAKLVLLH 281


>07_03_1313 -
           25708027-25708099,25708633-25708704,25710012-25710068,
           25711582-25711832
          Length = 150

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 492 HRYFCTFIDTKRLIIHNYKFNPEEIYNYQNKTNNLTSLIGFPL 620
           H  + + +   R I+ NY+F P E   Y  +   LT++ GF L
Sbjct: 80  HDVWKSKLAVNRYILLNYQFYPNEFKPYPLRMAMLTTIYGFGL 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,409
Number of Sequences: 37544
Number of extensions: 297033
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)