Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0638
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025465-2|AAB71028.1|  196|Caenorhabditis elegans Hypothetical ...    31   0.78 
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    29   3.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical p...    28   7.2  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    28   7.2  

>AF025465-2|AAB71028.1|  196|Caenorhabditis elegans Hypothetical
           protein K02E7.7 protein.
          Length = 196

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 125 MTTTTALTRVRIHTKKNMIRSYKIIFQFKLSFPWQFSSRNFQKTKITMINGCFF 286
           M T   L  V ++   N+  S K+  +F  +F   FS R F+K KI  +  C F
Sbjct: 103 MMTYPCLKSVLVNFDPNLRVSSKLESKFFFTFFKSFSLRKFRKKKIVFVANCSF 156


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -2

Query: 587 CFILII--VYFFRIKLVIVDY*AFSINECAKVPMGKKKQSRWMWLLPLLLGSSAIFPNLL 414
           CF ++I  ++F   + VI+      +    K+P+  KK   WM+     L  + + P+++
Sbjct: 82  CFHVMIPFIFFEAAQAVIILELVADVYIIVKLPVLYKKCDTWMY-----LSGALVVPSIV 136

Query: 413 GCYFISFHFVLFNF 372
           G  F+S+ F   ++
Sbjct: 137 GAIFVSWGFTNLDY 150


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 508  VQKYLWEKRNKVAGCGFFLFFSGPPQFSRIYLGV 407
            + KYL    NK+A C      S  P  SR YL V
Sbjct: 5762 ISKYLQTDTNKIAQCSSTFIHSRVPMDSRTYLSV 5795


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 301 IGFLRCQCRDYKFSIIIITFYIGTKLNKTK*NEMK*HPSKFGKIAEDPR 447
           + F +CQ R+  FSI       G   N+ K   +   PSKFG   + P+
Sbjct: 107 LSFSKCQARNLSFSITFSNQIYGYIYNRLK-YSLSIDPSKFGLREQAPK 154


>U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical
           protein F08F8.1 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 158 IHTKKNMIRSYKIIFQFKLSFPWQFSSRNFQK 253
           I T  N+ R   +IF+ KL+ PW  ++RN  K
Sbjct: 211 IFTSNNIARRL-LIFKLKLAMPWNTNNRNSVK 241


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/101 (21%), Positives = 42/101 (41%)
 Frame = +2

Query: 143  LTRVRIHTKKNMIRSYKIIFQFKLSFPWQFSSRNFQKTKITMINGCFFFSRWQLASCDAS 322
            LTR  +HTK+ +    + + +  L    +    +  K  I  +N      R   ASC ++
Sbjct: 777  LTRENMHTKEQVFMLQEKLRELNLELSTKNDEIDMVKASIEELN------RNSTASCTSN 830

Query: 323  VEITSFQLLLLHFTLGRN*IKQNEMK*NNTQVNSGKLRRTR 445
             EI   Q+ + +  +  + +KQ   K  +      K+ + R
Sbjct: 831  AEIARLQVSIRNSQIQEDLVKQENTKLRDELQEMQKMSKKR 871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,306
Number of Sequences: 27780
Number of extensions: 303959
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)