Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0638
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.68 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.4  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 537 HNYKFNPEEIYNYQNKTNN 593
           +NYK+N    YNY N   N
Sbjct: 94  NNYKYNYNNKYNYNNNNYN 112


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 549 FNPEEIYNYQNKTNNLT 599
           F  EEI N  NKTN +T
Sbjct: 171 FEREEIKNILNKTNEIT 187


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 464 WLLPLLLGSSAIFPNLLGCYF 402
           W+L L  G + I  N L C+F
Sbjct: 546 WMLDLNSGLNKITRNSLDCFF 566


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 464 WLLPLLLGSSAIFPNLLGCYF 402
           W+L L  G + I  N L C+F
Sbjct: 546 WMLDLNSGLNKITRNSLDCFF 566


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 537 HNYKFNPEEIYNYQNKTNN 593
           +NYK++    YN  N  NN
Sbjct: 87  NNYKYSNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 537 HNYKFNPEEIYNYQNKTNN 593
           +NYK++    YN  N  NN
Sbjct: 87  NNYKYSNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 537 HNYKFNPEEIYNYQNKTNN 593
           +NYK++    YN  N  NN
Sbjct: 87  NNYKYSNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 537 HNYKFNPEEIYNYQNKTNN 593
           +NYK++    YN  N  NN
Sbjct: 87  NNYKYSNYNNYNNNNYNNN 105


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 523 LVSMNVQKYLWEKRNKVAGCGFFLFFS 443
           LVS++ ++Y W   + + G   FL  S
Sbjct: 380 LVSLDKKQYTWRHTSVLIGWSAFLCIS 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,978
Number of Sequences: 438
Number of extensions: 4067
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)