Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0638
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47310.1 68418.m05832 expressed protein                             29   2.2  
At5g19170.1 68418.m02283 expressed protein predicted proteins, A...    29   2.2  
At1g11940.1 68414.m01380 expressed protein contains Pfam profile...    29   2.2  
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    29   3.8  
At5g23480.1 68418.m02755 expressed protein                             28   5.1  
At4g06536.1 68417.m00948 hypothetical protein                          28   5.1  
At5g49330.1 68418.m06104 myb family transcription factor contain...    27   8.9  
At1g69450.1 68414.m07980 early-responsive to dehydration protein...    27   8.9  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    27   8.9  

>At5g47310.1 68418.m05832 expressed protein
          Length = 245

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 82  IQKSS*NHPTAMMLDDDHDRSDKS 153
           IQ SS NHP A+   DD+D S++S
Sbjct: 165 IQLSSVNHPEALEFSDDNDGSEES 188


>At5g19170.1 68418.m02283 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 391

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 520 VSMNVQKYLWEKRNKVAGCGFFLFFSGP-PQFSRIYLGVISFHFILFYSISSQC 362
           V  +  +Y   K++    CG   +F GP PQ S    G   F F   + +S  C
Sbjct: 337 VQADYPEYYTVKKSSNRNCGNHFYFGGPGPQRSEAVRGTTVFGFCFLFYLSVFC 390


>At1g11940.1 68414.m01380 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 383

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -3

Query: 337 TCNLYTGIARSQLPS*KKETSVNHGNFCFLEITTRKLPGKTEFKLENYFITSDHIFFRMY 158
           T +    +ARSQ P  K   S +     FL +  R LP   +F  + +F   DH  F +Y
Sbjct: 51  TLSFPLSVARSQTPLHKY--SGDRPKLAFLFLARRDLP--LDFMWDRFFKGVDHANFSIY 106

Query: 157 SHS 149
            HS
Sbjct: 107 IHS 109


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
           DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
           [Arabidopsis thaliana]
          Length = 1576

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 561 EIYNYQNKTNNLTSLIGFPLKSR 629
           E YNYQN T  LT L+ F  K R
Sbjct: 465 EAYNYQNSTTGLTPLMVFAGKGR 487


>At5g23480.1 68418.m02755 expressed protein
          Length = 113

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 124 DDDHDRSDKSENTYEKKYDPK 186
           DDD D  DK++  Y+  YDPK
Sbjct: 36  DDDDDEKDKNDQAYQ-SYDPK 55


>At4g06536.1 68417.m00948 hypothetical protein
          Length = 169

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 505 QKYLWEKRNKVAGCGF 458
           +K+ W K NKV GCG+
Sbjct: 11  EKHEWAKENKVVGCGY 26


>At5g49330.1 68418.m06104 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA binding domain;
           identical to cDNA putative transcription factor
           (At5g49330) GI:15420625
          Length = 342

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -3

Query: 229 LPGKTEFKLENYFITSDHIFFRMYSHSCQSGRGRH 125
           LPG+T+ +++NY+  + H+  ++Y+ +  SG G +
Sbjct: 96  LPGRTDNEIKNYW--NSHLSRKIYAFTAVSGDGHN 128


>At1g69450.1 68414.m07980 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 646

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 584 FILIIVYFFRIKLVIVDY*AFSINECAKVPMGK-KKQSRWMWL 459
           F+L+ V  F  +L ++DY  +S N      +   K +S+W+W+
Sbjct: 31  FVLLPVNCFGDQLTVIDYADWSANSLDLFSVANLKVRSQWLWV 73


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 344  IENL*SLHWHRKKPIAIVKKRNI 276
            +ENL S+HW+R   + I+++ N+
Sbjct: 1597 LENLVSMHWYRNHNLTILRRINL 1619


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,826
Number of Sequences: 28952
Number of extensions: 267752
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)