Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0637
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   8.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 485 RVHAVISMLGRSIDGQSPHVVKSRIKWQTGAHPQK-HVCAEVITRCPEVIF 336
           RV  VIS L  S    +P  +  RIK  +G   ++    AEV+T  P+++F
Sbjct: 193 RVEEVISDLALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTN-PKLMF 242


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 485 RVHAVISMLGRSIDGQSPHVVKSRIKWQTGAHPQK-HVCAEVITRCPEVIF 336
           RV  VIS L  S    +P  +  RIK  +G   ++    AEV+T  P+++F
Sbjct: 193 RVEEVISDLALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTN-PKLMF 242


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 596 LPVXGRSFEXXAAISHXVFRPMSGG 522
           +P  GRSFE        +  P SGG
Sbjct: 760 MPTYGRSFELVNKTQFDIGAPASGG 784



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 605 VFRLPVXGRSFEXXAAISHXVFRPMSGG 522
           V  +P  GR+F         V  P SGG
Sbjct: 328 VIGMPTYGRTFTLSNTAKFGVHAPASGG 355


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -1

Query: 464  MLGRSIDGQSPHVVKSRIKWQTGAHPQKHVCAEVITRCPEVIFV 333
            +LGR  D   P     +     G  PQ+ V    +  C   +FV
Sbjct: 2200 ILGRDNDKTKPKPTTMKPTTTIGYEPQEPVLPAEVVPCQGRLFV 2243


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 387 WMSTGLPFNATFNYMRRLPIDAPAQH 464
           W+ TGL  +A   +  R  I  PA H
Sbjct: 110 WLGTGLLTSAGPKWQNRRKILTPAFH 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,736
Number of Sequences: 336
Number of extensions: 3088
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)