Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0637
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   1.7  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    29   2.3  
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666...    28   7.0  
06_03_0143 + 17215975-17216745                                         28   7.0  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 186 FISRMNPYSPELNYFLSYQYCR 251
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 450 APAQHADDSMDPXDVPQGSTAPQRTARH 533
           AP++HA  S  P   P  ++AP  + RH
Sbjct: 79  APSRHATPSSSPPSTPSSASAPPPSGRH 106


>11_06_0425 -
           23365108-23366028,23366182-23366340,23366445-23366640,
           23366995-23367527,23367817-23368272,23368507-23368758,
           23368890-23369007,23369836-23369993
          Length = 930

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 532 CRAVRCGAVLPCGTSXGSMLSSACWAGASMG 440
           C+A RC AV   G   G   S+ C +G   G
Sbjct: 706 CKAARCKAVAASGGGGGQAESAGCGSGCGGG 736


>06_03_0143 + 17215975-17216745
          Length = 256

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 522 CVVEQCFLVVRLXGPCCHQHAGQEHRWAVSACS 424
           C V  C+  VRL  P C   AG+  R    ACS
Sbjct: 202 CDVPFCYCRVRLRRPACAAPAGRAARRLEKACS 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,587
Number of Sequences: 37544
Number of extensions: 379143
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)