Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0637
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              29   4.1  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_43699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  27   9.4  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               27   9.4  

>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
 Frame = +3

Query: 276 FETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAP 455
           + T +   +   Y TN  Y+  D +++ ++  T   L     L       + RRL     
Sbjct: 70  YNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRR 129

Query: 456 AQHADDSMDP--XDVPQGSTAPQRTARHGTEH 545
            QH   +  P     P  +TAP  T     ++
Sbjct: 130 LQHKTTTTAPTTTTAPATNTAPATTTAPNNDY 161


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -2

Query: 541 SVPCRAVRCGAVLPCGTSXGSML----SSACWAGASMGSL 434
           SV CR V+C  V+ C  S    L    SS  WA  + GSL
Sbjct: 369 SVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 219 LNYFLSYQYCRSLGLQLA-SFETKEKADSITTYLTN 323
           L+YF+++ YCR +   L    +T E + ++ + +TN
Sbjct: 591 LSYFVAFVYCRKINRSLTMGVDTAEMSGAVVSGITN 626


>SB_43699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -1

Query: 506 ASLWYVXRVHAVISMLGRSIDGQSPHVVKSRIKWQTGAHPQKH--VCAEVITRCPEVIFV 333
           A+LW    + AV  ++G S  G  P  V   I W T  H      +C  V+     ++ +
Sbjct: 147 ATLWGFAILWAVFPLIGWSSYGPEPGYVSCSITWYTTDHNNVSYIICVSVLFFLIPIVTM 206

Query: 332 VTC 324
             C
Sbjct: 207 TFC 209


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 183  YFISRMNPYSPELNYFLSYQYCRSLGLQLASFETKEKADSI 305
            +FI+  NPY    +  +       LG  + S ETKEK   I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -3

Query: 402  DRCSSTKTCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDLMICSTD 238
            D C   K    +   P S+  I CN   +  S   +   +   M ++D ++CS D
Sbjct: 954  DACQPDKITCSKDNVPCSKDDITCNKDSIACSRERVACLNDNVMCLKDNVMCSKD 1008


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 556 LVXTCSVPCRAVRCGAVLPCGTSXGSMLSSA 464
           +V  C+V CRAV C AV  C     ++L  A
Sbjct: 358 VVLCCAVSCRAVLCRAVSCCAVLCRAVLCRA 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,711
Number of Sequences: 59808
Number of extensions: 443000
Number of successful extensions: 1151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)