Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0635
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.051
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   5.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   5.8  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   5.8  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   5.8  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.7  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 221 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 391
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 249 NLPSAANVTSTRSPRDSRP*KPADI 175
           ++P+A   +ST S RD  P  P D+
Sbjct: 349 SIPAAEPASSTTSARDQTPSTPKDV 373


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 245 RLLQAHKLVLSVCSPYFQEMFKMNPTQHPIV 337
           R+ ++ K + +VCS  +Q +   +PT  P V
Sbjct: 156 RIAESGKCLCTVCSCLYQGIISHSPTFRPFV 186


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 380 VISLLVQND*HLLKILSDVVLDSF*TFLENRENILIELIYVLAITCLRQPTLRLRDLHAT 201
           V++L + N  H    +S V+       LEN +N L E  Y+  +    + + ++    AT
Sbjct: 144 VLNLGLMNQIHTFDEISGVITLDSGVILENADNFLAEKGYMFPLDLGAKGSCQVGGCAAT 203

Query: 200 -AGHESLLTY 174
            AG   LL Y
Sbjct: 204 AAGGLRLLRY 213


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 146 SLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLV 271
           +L +NN H+N+ +G H  L+  +L + +   E  ++Q ++ +
Sbjct: 363 NLDYNNCHSNVWSGEHS-LTLSNLAEKSNLKEAEIIQGNRTI 403


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 278 LIELIYVLAITCLRQPTLRLRDLHATAGHESLLTY-LRGNCSSIVKIVRP 132
           L+ L Y     C+    LR    H T GH  LL + LR N + ++ +  P
Sbjct: 16  LVILFYAKNRFCISIDHLRPLKSHRTHGHYCLLNFSLRENKNYLIIVYLP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,748
Number of Sequences: 5004
Number of extensions: 34606
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)