Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0635
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 44 3e-05
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 44 3e-05
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 41 4e-04
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 41 4e-04
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 40 5e-04
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 40 8e-04
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 38 0.003
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 38 0.003
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 36 0.008
At5g48510.1 68418.m05998 speckle-type POZ protein-related contai... 35 0.018
At2g40440.1 68415.m04990 BTB/POZ domain-containing protein conta... 35 0.023
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 34 0.031
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 33 0.054
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 33 0.054
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 33 0.094
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 32 0.12
At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ... 32 0.16
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 31 0.38
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 31 0.38
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter... 30 0.66
At4g04090.1 68417.m00578 speckle-type POZ protein-related contai... 29 0.88
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain... 28 2.0
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 27 4.7
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 27 6.2
At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila... 26 8.2
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 44.4 bits (100), Expect = 3e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = +2
Query: 197 LLSRGDLVDVTLAAEGRLL--QAHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSA 364
L S G+ D+ + L Q+HK++LS+ S F +MF M+ + ++L DVS A
Sbjct: 344 LYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEA 403
Query: 365 LRDLLQFMYQGE 400
+ ++ FMY GE
Sbjct: 404 FKAMMNFMYSGE 415
Score = 26.6 bits (56), Expect = 6.2
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 185 GFHGLLSRGDLVD-VTLAAEGRL-LQAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSH 358
G L L D V L E + + AHK++L F + + ++ L+ VS+
Sbjct: 200 GLGNFLESWQLSDTVFLVGEEEMDVPAHKVILQASGN-----FPLRSSDGDVIQLRGVSY 254
Query: 359 SALRDLLQFMYQG 397
L LLQ++Y G
Sbjct: 255 PILHALLQYIYTG 267
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 44.4 bits (100), Expect = 3e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = +2
Query: 197 LLSRGDLVDVTLAAEGRLL--QAHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSA 364
L S G+ D+ + L Q+HK++LS+ S F +MF M+ + ++L DVS A
Sbjct: 344 LYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEA 403
Query: 365 LRDLLQFMYQGE 400
+ ++ FMY GE
Sbjct: 404 FKAMMNFMYSGE 415
Score = 26.6 bits (56), Expect = 6.2
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 185 GFHGLLSRGDLVD-VTLAAEGRL-LQAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSH 358
G L L D V L E + + AHK++L F + + ++ L+ VS+
Sbjct: 200 GLGNFLESWQLSDTVFLVGEEEMDVPAHKVILQASGN-----FPLRSSDGDVIQLRGVSY 254
Query: 359 SALRDLLQFMYQG 397
L LLQ++Y G
Sbjct: 255 PILHALLQYIYTG 267
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 40.7 bits (91), Expect = 4e-04
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 170 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQ-EMFKMNPTQHPIVFLK 346
+ + + F LL + D+T G AHKLVL+ SP+F+ + F + V +
Sbjct: 182 SELGSHFGVLLDSMEGSDITFNIAGEKFLAHKLVLAARSPFFKSKFFSEFEANNTEVTIN 241
Query: 347 DVSHSALRDLLQFMYQ 394
D+ + LLQFMY+
Sbjct: 242 DLEPKVFKALLQFMYK 257
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 40.7 bits (91), Expect = 4e-04
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 170 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQ-HPIVFLK 346
+ + + F LL DVT G QAHKLVL+ S +F+ MF + + V +
Sbjct: 189 SELGSHFGKLLDTLQGSDVTFDVAGEKFQAHKLVLAARSQFFRSMFYNTLAENNSDVVIS 248
Query: 347 DVSHSALRDLLQFMYQ 394
D+ + LL FMY+
Sbjct: 249 DLEPKVFKALLHFMYK 264
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 40.3 bits (90), Expect = 5e-04
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 173 NMSAGFHGLLSRGDLV-DVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKD 349
++S F LL G DVT + EGRL+ AH+ +L+ S +F++ F + P+ +
Sbjct: 10 SLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGTDSPQPVTGIDP 69
Query: 350 VSHSAL 367
H ++
Sbjct: 70 TQHGSV 75
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 39.5 bits (88), Expect = 8e-04
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 221 DVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMN-PTQHPIVFLKD-VSHSALRDLLQFMY 391
DV +GR ++AH+++LS SP+F++ F+ + + F K+ +S+ AL L+ F Y
Sbjct: 174 DVMFYVQGRPIEAHRVILSARSPFFKQKFENEWKDRREVRFSKEKLSYPALCSLIHFFY 232
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +2
Query: 173 NMSAGFHGLLSRGDLV-DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQ 325
+MS + LL G DVT + EGRL+ AH+ +L+ S +F++ F + +P+Q
Sbjct: 11 SMSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCESDPSQ 63
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 188 FHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQ-EMF-KMNPTQHPIVFLKDVSHS 361
F LL G DVT +G AHKLVL+ S F+ ++F + + ++DV
Sbjct: 192 FGKLLESGKGADVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLRSENTNCIIIEDVQAP 251
Query: 362 ALRDLLQFMYQGE 400
+ LL F+Y E
Sbjct: 252 IFKMLLHFIYWDE 264
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 36.3 bits (80), Expect = 0.008
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 170 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQ-EMFKMNPTQHPIVFLK 346
+++ + F LL D D+T G +AH+LVL+ SP F+ E + + + +
Sbjct: 200 SDIGSHFGMLLENEDGSDITFNVSGEKFRAHRLVLAARSPVFESEFLDVTGEEDRDIEVT 259
Query: 347 DVSHSALRDLLQFMYQ 394
D+ + LL ++Y+
Sbjct: 260 DMEPKVFKALLHYIYK 275
>At5g48510.1 68418.m05998 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 224
Score = 35.1 bits (77), Expect = 0.018
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Frame = +2
Query: 173 NMSAGFHGLLSRGDLVDVTLAA----EGRLLQAHKLVLSVCSPYFQEMFKMN----PTQH 328
+ S G +L+ VDV L A EG + AHKL+L+ S F+ MF+++ T+H
Sbjct: 9 HFSGGLAKVLAEKWQVDVMLKAKNSDEGSAISAHKLILASRSEVFKNMFELDEFKTSTKH 68
Query: 329 -PIVFLKDVSHSALRDLLQFM 388
+ L ++ H L ++F+
Sbjct: 69 VETITLSEMKHEELEAFVEFI 89
>At2g40440.1 68415.m04990 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain;
Length = 194
Score = 34.7 bits (76), Expect = 0.023
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +2
Query: 185 GFHGLLSRGDLVDVTLAA-----EGRLLQAHKLVLSVCSPYFQEMFKMN----PTQHPIV 337
GF +L VDV L A EG AHKLVLS S F++M + + Q +
Sbjct: 13 GFAKILKEQRQVDVRLKAGDSGDEGASTSAHKLVLSARSEVFKKMLESDEIKASAQLETI 72
Query: 338 FLKDVSHSALRDLLQFMY 391
L ++ H L ++F+Y
Sbjct: 73 TLCEMKHEELEAFIEFIY 90
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 34.3 bits (75), Expect = 0.031
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 170 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMF--KMNPTQHPIVFL 343
+NM G LL D+ +AHKL+L+ SP F+ F + + +
Sbjct: 178 SNMGQGLKDLLDSEVGCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVI 237
Query: 344 KDVSHSALRDLLQFMY 391
D+ S + +L F+Y
Sbjct: 238 DDIEPSIFKAMLSFIY 253
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 33.5 bits (73), Expect = 0.054
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 251 LQAHKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQG 397
+ HK VL+ S F+ M + + + L D+SH L+ LL+F+Y G
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSG 88
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 33.5 bits (73), Expect = 0.054
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 251 LQAHKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQG 397
+ HK VL+ S F+ M + + + L D+SH L+ LL+F+Y G
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSG 88
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 32.7 bits (71), Expect = 0.094
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 251 LQAHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGE 400
+ AHK VL SP F+ M + M + + + DVS+ ALR + ++Y E
Sbjct: 80 IPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAE 131
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 32.3 bits (70), Expect = 0.12
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 170 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYF 295
+N+ LL G DV +G AHKLVL+ SP F
Sbjct: 187 SNLGQQLGNLLESGKGCDVVFQVDGETFNAHKLVLATRSPVF 228
>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 586
Score = 31.9 bits (69), Expect = 0.16
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Frame = +2
Query: 176 MSAGFHGLLSRGDL--VDVTLAAEGRLLQAHKLVLSVCSPYFQEMF----KMNPTQHPIV 337
+S+ LLS D D + +G + H+ +L+ S +FQ++F K++ T+ P
Sbjct: 44 LSSNLEQLLSNSDCDYSDAEIIVDGVPVGVHRCILAARSKFFQDLFKKEKKISKTEKPKY 103
Query: 338 FLKD------VSHSALRDLLQFMYQG 397
L++ V+H A L ++Y G
Sbjct: 104 QLREMLPYGAVAHEAFLYFLSYIYTG 129
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 30.7 bits (66), Expect = 0.38
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 200 LSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALRD 373
++ L DVT EGR AH++ L S F+ MF + + + ++
Sbjct: 535 VNNATLSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFEL 594
Query: 374 LLQFMYQG 397
+++F+Y G
Sbjct: 595 MMRFIYTG 602
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 188 FHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQ 298
F LL G DVT +G AHKLVL+ S F+
Sbjct: 192 FGKLLESGKGADVTFEVDGETFPAHKLVLAARSAVFR 228
>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 329
Score = 29.9 bits (64), Expect = 0.66
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 197 LLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALR 370
+L+ D+T+ A + AH+ VL+ SP F+ MF + + + + + D+ A +
Sbjct: 157 MLTESIYTDITINASDGSIGAHRAVLAARSPVFRSMFLHDLKEKELSEINVLDMPLDACQ 216
Query: 371 DLLQFMY 391
L ++Y
Sbjct: 217 AFLSYIY 223
>At4g04090.1 68417.m00578 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 192
Score = 29.5 bits (63), Expect = 0.88
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 218 VDVTLAA----EGRLLQAHKLVLSVCSPYFQEMFKMN----PTQHPIVFLKDVSHSALRD 373
VDV L A + + AHK +LS S F+EMF+ + ++ + L ++ H L
Sbjct: 23 VDVRLMARDSEKDAAISAHKRILSARSEVFEEMFESDKYKASSKLETITLSEMKHEVLEA 82
Query: 374 LLQFMY 391
+ F Y
Sbjct: 83 FVDFTY 88
>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein low similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 443
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 203 SRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQH 328
S+G LV+ T+ E LL + + +C + F +NP QH
Sbjct: 351 SKGYLVEDTIVLETTLLCVTETKVKLCDMCKYKFFLLNPRQH 392
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 221 DVTLAAEGRLLQAHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQ 394
DVT +G+ AHK+ L S F+ MF V + ++ +++F+Y
Sbjct: 541 DVTFLIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFIYS 600
Query: 395 G 397
G
Sbjct: 601 G 601
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 279 TDRTNLCA--CNNLPSAANVTSTRSPRDSRP*KPAD 178
+++ N C C++ P++ + +RSP S P PAD
Sbjct: 190 SNKNNRCCLFCSHSPTSTLLNLSRSPSSSPPLSPAD 225
>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 959
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 296 ENRENILIELIYVLAITCLRQPTLRLRDLHATAGHESLLTY---LRGNCSS 153
E+R+N L E++ VL + C L L H S+L L+ NC+S
Sbjct: 320 ESRQNALAEILEVLTVVC-ETHNLPLAQTWVPCQHGSVLANGGGLKKNCTS 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,853,917
Number of Sequences: 28952
Number of extensions: 174782
Number of successful extensions: 423
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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